Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2724 84.2 2e-11 seq3122 82.4 5e-11 >seq2724 Length=367895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || |||||||| || || || || |||||||| ||| ||| | | |||| || Sbjct 201687 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTCG 201746 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | |||| |||||| ||||| || || ||||||||||| Sbjct 201747 AGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 201806 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || || || || || ||||| ||||| ||| Sbjct 201807 ATCTTGGCCTTCACGTTCTCGATGGTGTCCGAGGGCTCAACCTCCAAGGTGATGGTCTTA 201866 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || ||||| || ||||| Sbjct 201867 CCGGTCAGGGTCTTCACAAAGATCTGCAT 201895 >seq3122 Length=1344033 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAA--TTCTCGCGTCT 15024 ||| | |||||||||||| || || || |||||||| | | || || | | | || Sbjct 596941 AACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGT--CCGACAAGGTACGACCATCC 596884 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || | || || |||||| | |||| ||||||||| || || ||||| ||||| || Sbjct 596883 TCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTTATCC 596824 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 || ||| || || |||| || ||||| ||| || || | ||| ||||| Sbjct 596823 TGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACCTCCAGGGTGATGGTC 596764 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| |||| ||| || || || ||||||||| Sbjct 596763 TTACCAGTCAAAGTCTTGACGAAGATTTGCATA 596731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357378188027735