Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3071 300 1e-76 seq2724 113 4e-20 seq3122 86.0 6e-12 >seq3071 Length=929925 Score = 300 bits (332), Expect = 1e-76 Identities = 1162/1809 (64%), Gaps = 44/1809 (2%) Strand=Plus/Minus Query 122886 AAAATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGC 122945 || ||| ||| ||||| | || ||| || || ||||| ||||| || || | ||| Sbjct 834657 AAGATCAAGGGCAAGGTGGTGGAGCGTCCGCAGCACATGCTGATGCGGGTGGCGGTTGGC 834598 Query 122946 GTGCACGGACGCGACATCGAAAACGCGACC---GAAACTTACGATTTGATGTCTCAAAAA 123002 | ||||| | ||||| || |||| || || || ||| | || |||| | Sbjct 834597 ATTCACGGGCTGGACATTGA---CGCGGCCATTGAGACGTACAACCTGCTGTCGGAGCGG 834541 Query 123003 TTTTTCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCT 123062 | || |||||||| || || |||| || || | |||| | || ||| |||| Sbjct 834540 TACTTTACGCACGCCTCGCCGACCATGTTTGCGGCGGCCACGCGGCGTCCGCAGCTGTCG 834481 Query 123063 TCGTGTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGC 123122 ||||| || || | || || |||| || || ||| ||| || || || || || Sbjct 834480 TCGTGCTTCCTGTTGACGATGAGCGACGATAGTATCGACGGAATTTACGACACGCTGAAG 834421 Query 123123 GATTGCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGA 123182 | ||||||||||| ||||| | | || || || || ||||| |||||| | | | Sbjct 834420 CAGTGCGCGTTGATCTCCAAGTCGGCGGGTGGAATCGGTGTGAATGTGCACTGCATCCG- 834362 Query 123183 GGCCGCGGAAGC-CG--CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATG 123239 ||| || || || ||| | || |||| ||| | |||||| | | ||| Sbjct 834361 GGCGAAGG--GCACGTACATTGCCGGAACGAACGGGATCTCGAACGGGCTGGTGCCGATG 834304 Query 123240 CTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGC 123296 ||| | |||||||| ||| | | |||| |||| |||||||||||||| || || Sbjct 834303 CTGAGGGTTTACAACAACACGGCGCGGTACGTTGACCAGGGCGGCAACAAGCGGCCCGGG 834244 Query 123297 GCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAA 123356 ||| | ||||||||||| ||||||||||||| ||| | | || ||||| | || || Sbjct 834243 GCGTTTGCGATCTATCTGGAACCGTGGCACGGAGATATCTTTGAGTTTTTGGACTTGAAG 834184 Query 123357 CGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCC 123416 |||| || ||| || || || || |||| ||||| | ||| | || Sbjct 834183 AAAAACACCGGCAAGGAGGAGGTCCGCGCTCGGGACATGTTCTACGCGCTGTGGATTCCG 834124 Query 123417 GATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGG 123476 ||| |||| ||| || || | | ||| | |||| || ||||| |||| || Sbjct 834123 GATCTGTTCATGAAGCGAGTCGAGGCTAACGAGGACTGGTGTCTGATGTG-CCCGCACGA 834065 Query 123477 -TGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGA 123535 |||||||| | || || || | |||| || || ||||| || ||||| Sbjct 834064 CTGTCCCGGACTCCCGGAAACTTGGGGTGAGGAGTTCGAGAAGCTGTACACGACGTACGA 834005 Query 123536 GCGCGAAGGCAAACAGGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGA 123595 | |||||| | || || |||| ||| | ||| ||| || ||||| Sbjct 834004 GAACGAAGGACGCTACATTCGTAAGGTCAAGGCTCAGGATCTGTGGTTCGCGATCATCGA 833945 Query 123596 AACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAAC 123655 | || ||||| || ||| |||||||||||| ||||| ||||| |||||| |||| | Sbjct 833944 GTCGCAGGTCGAGACGGGAGTGCCGTACATGCTGTACAAGGACGCTTGCAACCGGAAGAG 833885 Query 123656 CAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA 123715 ||| ||| ||| | || || ||||| ||| || |||||| | ||||| | || || Sbjct 833884 CAACCAGCAGAACATCGGCACCATAAAGTGTTCGAACCTTTGCACGGAAATCGTGGAGTA 833825 Query 123716 CAG--CGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGC 123773 | | | | || || | |||||||| || ||||| ||||| || || | Sbjct 833824 CTCGTCCAAG--GACGAAATTGCCGTGTGCAACTTGGCCTCGATCGCGGTCAACATGTTT 833767 Query 123774 GTCGAAAACGGCG----CTTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGT 123829 ||| ||| ||| | | | | ||||| | |||||| | | |||| || Sbjct 833766 GTC-AAACCGGACAAGTCGTATGACTTCCAGAAGCTCAAGGAAGTCTCTAAAATAGTCAC 833708 Query 123830 AAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTT---GGAGG--AAGCGCGT 123884 ||| ||| |||||||||||||||| | || | || || | ||||| |||||| Sbjct 833707 AAAAAATCTGAACAAAATTATCGACATCAACTACTACCCAGTTCCGGAGGCCAAGCGC-- 833650 Query 123885 TTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTT 123944 || || || ||| | ||| ||||| | || | || || ||||||||||||| Sbjct 833649 ---TCCAACATGCGTCACCGCCCGATCGGAATCGGTGTCCAGGGAATGGCCGACGCGTTC 833593 Query 123945 GTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCC 124004 | || ||||| | |||||||| ||||| ||||| | ||| || |||||| | Sbjct 833592 ATCCTGATGCGCTTCCCGTACGAGAGCGAGGAAGCCCAAAAGCTGAACCAGCAAATCTTC 833533 Query 124005 GAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCG 124064 ||||| || || ||||| || | ||||| ||||| ||| |||| | | |||| | Sbjct 833532 GAAACCATCTACTACGGTGCCCTCGAGGCAAGCTGTGAAATTGCCGAGAAGGACGGAACC 833473 Query 124065 TACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG--- 124121 ||||||| |||| ||| | |||| ||| || || ||||||||||||||||| Sbjct 833472 TACGAAACGTACGATGGCTGTCCGGTTAGCAAGGGCATCCTGCAGTACGACATGTGGAAC 833413 Query 124122 AATGCTACA-CCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCA 124180 || || || ||||| ||||||||||| | | || || || | | ||| Sbjct 833412 AAGGCCCCATCCGAC----CTGTGGGACTGGGCCCCACTCAAGGAAAAAATCGCCAAGCA 833357 Query 124181 CGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTT 124240 ||| | || ||||| || | | || ||||| || || |||| || ||||| | Sbjct 833356 CGGAGTCCGAAACTCCCTTCTCCTCGCCCCAATGCCAACCGCGTCCACCGCGCAAATCCT 833297 Query 124241 AGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGC 124300 || ||||||||||||||||| |||| ||| ||| | ||| || || ||| | | Sbjct 833296 CGGCAACAACGAATCCTTCGAACCGTACACCTCCAACGTCTACAACCGGCGCGTGCTGTC 833237 Query 124301 CGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTA 124360 |||||| || || || | || || ||| | | | ||| | | | | ||| Sbjct 833236 CGGCGAGTTCCAGGTCGTCAACCACCATCTCCTCAAAGACCTCACCGAACTCGAGCTGTG 833177 Query 124361 CGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTC 124420 || || ||||| ||| |||| || || | ||| | | |||| ||||| Sbjct 833176 GGACGACGACATGAAGAACAAAATCATCGCCAGCAACGGCTCCATCCAGCACATCGACGA 833117 Query 124421 GATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAATGAAAAATAAACGATT 124480 || || | ||| || | || |||||||| ||||||||||| ||| | Sbjct 833116 AATCCCCAAGCACATCCGCGAGCTCTACAAAACGGTGTGGGAAATCTCCGTCAAAACCTG 833057 Query 124481 AATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTT 124540 || ||||||||| |||||| ||||| | || || || || || || ||| | Sbjct 833056 CATCAAAATGGCCGCCGACCGGGGCGCCTTCATCGACCAGTCCCAGTCGTTCAACATCCA 832997 Query 124541 TGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGG 124600 || |||||||||| ||||| | | ||| || ||| | ||| |||| | || Sbjct 832996 CGTCGCGGAACCCAACTACGGCAAACTCACCTCGATCCACTTCTACGGCTGGAAGATGGG 832937 Query 124601 ACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTAC 124660 ||||||||| || ||||| ||| | | |||||||| || | | | ||||| || || || Sbjct 832936 ACTCAAAACCGGAATGTACTACCTGCGCACCAAACCCGCCGTCAACGCCATCCAGTTCAC 832877 Query 124661 CGTCGACAA 124669 ||| ||||| Sbjct 832876 CGTGGACAA 832868 >seq2724 Length=367895 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||||||||| | || ||| | || || || || ||||| ||||| || ||||| Sbjct 202806 ATTCCTCCGCGGAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCC 202865 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || ||||| || ||||| ||| | |||| || |||||||| || Sbjct 202866 GACAAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGG 202925 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || ||||| || || |||| || | || | |||||| || | ||| Sbjct 202926 GGAATTCCCTCCTTGTCTTGGATCTTAGCCTTGA-CGTTCTCGATGGTGTCCGAGGGCTC 202984 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || | ||||| || |||||||| || || || || || || ||||| Sbjct 202985 GACCTCCAAAGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 203035 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||||||||| | || || ||||| ||||| || ||||| ||||| || ||||| Sbjct 202122 ATTCCTCCGCGGAGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCC 202181 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||||| || ||||| ||| | || | || ||||| || || Sbjct 202182 GAAAGGGTGCGGCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGG 202241 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || || || || || || || || |||| || | |||||| || | |||| Sbjct 202242 GGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCG 202301 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | || || ||||| || || || || || || ||||| Sbjct 202302 ACCTCGAGGGTGATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCAT 202351 >seq3122 Length=1344033 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| || | || || ||||| || || || ||||||||||| || || || Sbjct 596277 ATACCTCCGCGCAGACGCAGTACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCC 596218 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| ||||| || || || ||| | |||| || || || || || Sbjct 596217 GAAAGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGA 596158 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || |||||||| | | || | | | || | || | ||| || || | ||| Sbjct 596157 GGGATTCCCTCCTTATCTTGGA-TCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTC 596099 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || ||||| || ||||| || || || || ||||| Sbjct 596098 GACCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 596048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451985283723160