Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3071 239 7e-58 seq3141 176 7e-39 >seq3071 Length=929925 Score = 239 bits (264), Expect = 7e-58 Identities = 423/605 (70%), Gaps = 10/605 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 ||||||||| |||||||| |||||||| ||||| || || | | ||| |||||||| || Sbjct 832867 CTTGTCCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTCC 832926 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||| || || ||| ||| ||| ||||| | ||| || || | ||||||| |||||| Sbjct 832927 GGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTTGGG 832986 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCG-CCCGATCTGCGG 204017 || || | ||| ||||| | |||||| ||||||||| |||||| |||| || |||| Sbjct 832987 TTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATG-AAGGCGCCCCGGTCGGCGG 833045 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| ||||| ||| || || || ||||||||||| ||| | | || | | ||| Sbjct 833046 CCATTTTGATGCAGGTTTTGACGGAGATTTCCCACACCGTTTTGTAGAGCTCGCGGATGT 833105 Query 204078 GTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | | || | || | | | || || ||| ||||||||| ||| || | | | || || Sbjct 833106 GCTTGGGGATTTCGT-CGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTCTTC 833164 Query 204137 GTCTCCTCCCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGAT 204195 | || || |||||| || | | | | | || || | || ||| |||||| || Sbjct 833165 ATGTCGTCGTCCCACA-GCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACGAC 833223 Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 ||| || || ||||||||||| | ||| || | | |||| |||| | |||||||| | Sbjct 833224 CTGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAGGA 833283 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||||||||||| || || |||||| || || ||||| || || ||||| ||||| Sbjct 833284 TTCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGGGA 833343 Query 204316 GTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTCGTGCA--TCGCA 204373 ||| || || |||| || || | ||| || | || |||||| || ||| | Sbjct 833344 GTTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCGGA 833403 Query 204374 CTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTGCCCTTG 204433 |||| | | |||||||||| |||| | |||||| | || || || | ||| | | Sbjct 833404 -TGGG-GCCTTGTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGACAGCCATCG 833461 Query 204434 TACGT 204438 ||||| Sbjct 833462 TACGT 833466 Score = 116 bits (128), Expect = 6e-21 Identities = 430/668 (64%), Gaps = 12/668 (2%) Strand=Plus/Plus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||||||||| || ||||| | ||| ||||| | || | | ||||||||| Sbjct 833827 CTCCACGATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGCTGGTTGCT 833886 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| ||||| || | ||||||||||| |||| |||||| ||| |||| | ||| || || Sbjct 833887 CTTCCGGTTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGACCTGCGACTC 833946 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAGACT 205061 | || | | ||||| || |||||| || | | ||| |||| || Sbjct 833947 GATGATCGCGAA-CCACAGATCCTGAGCCTTGACCTTACGAATGTAGCGTCCTTCGTTCT 834005 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATT 205121 |||| | ||||||||| | | || || ||| | ||| || || ||||| | Sbjct 834006 CGTACGTCGTGTACAGCTTCTCGAACTCCTCACCCCAAGTTTCCGGGAGTCCGGGACAGT 834065 Query 205122 TTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAGGTCGC 205181 | || ||||||||| |||| || | | | || | || ||| ||||| || Sbjct 834066 CGTGCGGGCACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCATGAACAGATCCG 834125 Query 205182 TGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTTT 205241 |||||||| |||| |||| || || || | | | || | || ||| || | Sbjct 834126 GAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCCGGTGTTTTTCT 834185 Query 205242 TCAAGTCCAGCCAAGCCGCAATG---TCGGCGTGCCACGGCTCTAACCACACGGCCATTG 205298 ||||||||| || | ||| | || |||||||||| || | | | || | | Sbjct 834186 TCAAGTCCA---AAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGATCGCAAACG 834242 Query 205299 CGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCA 205358 | || |||| |||||| || |||||||| || || | | | |||| |||| | || Sbjct 834243 CCCCGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTAAACCCTCA 834302 Query 205359 GCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCC 205418 ||||||||||||| ||||| | | |||||||||| | | ||| || ||| | |||| Sbjct 834303 GCATCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGCCCTTCGCCC 834362 Query 205419 TCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTC 205476 | | || | || | | || || || || | |||||| |||| ||||||| Sbjct 834363 GGATGCAGTGCACAT--TCACACCGATTCCACCCGCCGACTTGGAGATCAACGCGCACTG 834420 Query 205477 TTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGA 205536 | ||| ||| ||| || || |||| |||||| || |||| ||| ||||||| Sbjct 834421 CTTCAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGGAAGCACGA 834480 Query 205537 AGCCAGCT 205544 | ||||| Sbjct 834481 CGACAGCT 834488 >seq3141 Length=1574671 Score = 176 bits (194), Expect = 7e-39 Identities = 362/530 (68%), Gaps = 15/530 (3%) Strand=Plus/Minus Query 159644 ACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAAT 159703 || ||||||||||| ||||| ||||| ||||| | || || | |||||||| | ||| Sbjct 1345998 ACCTTCTTCTCGAAGAAGTTCGTCTTTCCCTCGAGCGAGATGAACTCCATGAAGCTGAAC 1345939 Query 159704 GGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACA 159763 |||||||| || ||| ||| || || | ||| | | || || ||| Sbjct 1345938 GGGTTCTTGGTGTTGTAGATCTTTTCGTTGCCCAGCTCGAGCAGGAGGCGATCCGCGACA 1345879 Query 159764 AATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGC 159822 || |||||||| || | ||||| |||| ||||| || || ||||| ||||| || || Sbjct 1345878 AACTCGATGTA-CTGCGACATCAGCTCGCAGTTCATGCCGAGCAGGTCGACGGGCAGGGC 1345820 Query 159823 TTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAG-ACACGTT 159881 || || || ||||||| ||| || |||| |||||| | || | |||| || |||| Sbjct 1345819 TTTCGTGAGGAACTCCTGCTCGATGACGACGGCTTCGCGGATGATTT-CGAGCACGCGTT 1345761 Query 159882 CGTACCCCGGCTT---GCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 | | ||||| | ||| | || |||| ||| || ||||||||| || Sbjct 1345760 CTTTGGAGGGCTTCTGGACCAGGTAGCGG------AACATGAGACAGGCAAAGTCGGTGT 1345707 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | ||||||||||| || ||||| | |||||| || | | | ||||| ||||||| |||| Sbjct 1345706 GGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTCAGGCCGGGCATGAGGCCAC 1345647 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCG 160058 || |||||||| || |||| ||| || ||||| || ||||| ||||| ||||| | Sbjct 1345646 GCTTCTTGAGCCAGAAGATGGACGCGAAGCTGCCGCTGAAGAAGATGCCCTCGACGGCGG 1345587 Query 160059 CAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCC 160118 | || || || | | ||| ||||| ||||| || | |||| | | |||| Sbjct 1345586 CGAAAGCGACCACGCGCTCGCCAAAGTTGGCGTGCTTGCTCGAGATCCAGTTCATCGCCC 1345527 Query 160119 ATTCAGCCTTCTTTGCGATGCACGGCATGCG-CTCGACGGCGTTAAACAA 160167 | |||||||| || | || |||| ||| ||||| ||||| ||||| Sbjct 1345526 AGTCAGCCTTTTTCTTCACACAGGGCA-GCGTCTCGATCGCGTTGAACAA 1345478 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 160203 CAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGA 160262 |||||||| ||||||||| || |||||| || || || || ||||| ||| ||||| Sbjct 1345269 CAATCAGCAGCGAGTACATCTCGCTGTGCACGTTCTCCATCGCGATCTGGAAGCCGTAGA 1345210 Query 160263 AATATGTCGCCTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAA 160322 | | ||||||| |||||||||||| |||||| | |||| || | || | Sbjct 1345209 AGCAGCGCGCCTCCGTCACCTGCACCTCCTGGCTGAACCGCTCGACCAGGTTCTCGTTCA 1345150 Query 160323 CCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTT 160382 | | ||||| | || || ||||| |||| |||||| ||||| || || |||| | Sbjct 1345149 CGATGCCGTCCGAAGCGGCGAAGAAGGCCAGCACGTGCGAGATAAAGTGCTTCTCACCCG 1345090 Query 160383 TGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTC 160434 ||||| ||| ||||||| || ||| | | || ||| ||||| || Sbjct 1345089 ACTTGAG---CTTCTCCCAGTCGCCCAAGTCCTTCGACAGATCGACCTCCTC 1345041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795123682035760