Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq3140 149 7e-31 seq2724 149 7e-31 seq3133 140 4e-28 seq3122 113 5e-20 >seq3140 Length=1521851 Score = 149 bits (164), Expect = 7e-31 Identities = 165/219 (75%), Gaps = 6/219 (3%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | |||||| || | ||| |||||| ||||| ||||||||||| || ||||| | Sbjct 429108 ACGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 429167 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || ||||||||||||||||| ||||| |||||||| || | ||| | | |||||| Sbjct 429168 GTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGGGATTCCCTCCTT 429227 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT---TCCACATCCACCGT 46554 |||| |||||| |||| || | | |||||| |||| || || || | || Sbjct 429228 GTCCTGGATCTTGGCTTTGACATTCTCGATCGTGTC---CGATGGCTCGACCTCAAGGGT 429284 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| ||||||||||| || || || ||||| ||||| Sbjct 429285 GATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCAT 429323 >seq2724 Length=367895 Score = 149 bits (164), Expect = 7e-31 Identities = 171/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||||| | ||| |||||| |||||||||||||||| Sbjct 202579 TGCCACCACGCAGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGG 202638 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||| || | || || |||||||| |||||||| |||| ||||||||||| | | Sbjct 202639 ACAGAGTACGACCATCTTCAAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAG 202698 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| ||||| || | | ||||| | || | Sbjct 202699 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGA 202758 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 | |||| |||||||| ||||| ||||| ||||| || ||||| |||||| Sbjct 202759 CCTCCAGAGTGATGGTCTTGCCGGTCAGGGTTTTCACGAAGATCTGCATT 202808 Score = 136 bits (150), Expect = 4e-27 Identities = 176/242 (73%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | ||||| |||||||| | ||| |||||| ||||| ||||| || | Sbjct 203035 TGCCACCACGCAGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCG 203094 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| || | |||||| |||||||| |||| ||||||||||| | || Sbjct 203095 AAAGGGTGCGGCCGTCCTCCAACTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGCG 203154 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | |||||||||| |||||| ||||| || | | ||||| || || | Sbjct 203155 GGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCCGACGGCTCGA 203214 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTGCACAAAC 46604 | || | |||||||| || || |||| || || || ||||||||||| |||| |||| Sbjct 203215 CCTCGAGGGTGATGGTCTTACCGGTCAAAGTCTTGACGAAGATTTGCATCCTGCA-AAAC 203273 Query 46605 AA 46606 || Sbjct 203274 AA 203275 Score = 127 bits (140), Expect = 2e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| ||||| || |||| ||||||||||| || ||||| Sbjct 201704 CTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTCGAGCTGCTTTCCAGCGAA 201763 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | || | || ||||||||| |||||| ||| | | Sbjct 201764 GATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 201823 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || |||| |||||||| || || ||||| || || || Sbjct 201824 CTCGATGGTGTCCGAGGGCTCAACCTCCAAGGTGATGGTCTTACCGGTCAGGGTCTTCAC 201883 Query 46582 AAAGATTTGCATT 46594 |||||| |||||| Sbjct 201884 AAAGATCTGCATT 201896 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || || | || || | || ||||||||||| |||||||| Sbjct 201933 TCCTTCTGGATGTTGTAATCCGACAAGGTACGACCATCCTCGAGCTGCTTTCCGGCGAAG 201992 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | |||||||| || | || | | |||||||||| |||||| ||||| || Sbjct 201993 ATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTC 202052 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| ||| || ||| || |||| || ||||| || || |||||||| || || Sbjct 202053 TCGATCGTATCGGACGGTTCGACCTCCAGAGTAATGGTCTTACCGGTCAGCGTCTTCACG 202112 Query 46583 AAGATTTGCATT 46594 ||||| |||||| Sbjct 202113 AAGATCTGCATT 202124 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| ||||| || | || |||||| ||||| ||||| || || Sbjct 202809 CCTCCGCGGAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGAC 202868 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || |||| || | |||||| |||||||| |||| ||||||||||| | || Sbjct 202869 AAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGA 202928 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||||||| |||||| ||||| || | | ||||| | || || Sbjct 202929 ATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACC 202988 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || ||||| ||||| ||||| || || || ||||| ||||| Sbjct 202989 TCCAAAGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 203035 >seq3133 Length=1421877 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||||| || |||||| ||||| |||||||| || || ||||| | Sbjct 291908 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA 291849 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| |||||||| || | || | | ||||||| Sbjct 291848 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTG 291789 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | | ||| ||| || || || || | |||||| Sbjct 291788 TCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGGACGGCTCGACCTCGAGAGTGATG 291729 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || ||||| || ||||| || ||||| ||||| Sbjct 291728 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 291694 >seq3122 Length=1344033 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| ||||||||||| || |||| |||| ||||||||||| | | ||| | Sbjct 593297 CGCAGCACCAGATGCAGCGTCGATCCCTTCTGGACGTTGTAGTCGGACAAGGCGCGGCCA 593238 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| ||||||||| || | || | | |||||| Sbjct 593237 TCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCTGGGGGGATACCTTCCTTG 593178 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| |||||| ||||| || | ||||||| | || || |||| || ||| Sbjct 593177 TCCTCGATCTTGCCCTTGATGTTCTGGATCGTGTCGACGGGCTCGACGTCCAGGGTAATG 593118 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || || || || || || ||||| ||||| Sbjct 593117 GTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCAT 593083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| |||||||| | || |||||||||||| |||||||| || Sbjct 596274 CCTCCGCGCAGACGCAGTACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCGAA 596215 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || | || || | |||||| || ||||| |||| ||||| || || | || Sbjct 596214 AGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGG 596155 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| || |||||| ||| | || | | || || | || || Sbjct 596154 ATTCCCTCCTTATCTTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACC 596095 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| ||||| || || || ||||| ||||| Sbjct 596094 TCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 596048 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| |||||||| | ||| |||||| ||||| |||||||| || Sbjct 596958 CCTCCGCGCAGACGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGAC 596899 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | || || | || || |||||||| || ||||| |||| ||||| || || | || Sbjct 596898 AAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGG 596839 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| ||| |||||| ||| | | | | || || | ||| || Sbjct 596838 ATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACC 596779 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| || || |||| || || || ||||||||||| Sbjct 596778 TCCAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 596732 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||||| |||| ||| | || |||||| |||||||||||||| || Sbjct 597414 CCTCCGCGCAGACGCAGAACCAAATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAA 597355 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || | |||||| || ||||| |||| ||||| || || | || Sbjct 597354 AGAGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGGGGG 597295 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | |||||| || |||||| ||| | | | | || || | ||| || Sbjct 597294 ATTCCCTCCTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACC 597235 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||||||| ||||| |||| || || || ||||| ||||| Sbjct 597234 TCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 597188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565215995362920