Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2856 120 1e-21 seq3122 109 2e-18 seq2724 86.0 2e-11 >seq2856 Length=487875 Score = 120 bits (132), Expect = 1e-21 Identities = 187/262 (71%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCT-AACAGGTTC 452049 ||||| || || || || || || ||||| |||||||| ||||||||| | ||| | | Sbjct 32156 AATCCGGACGAGGCCGTAGCTTACGGTGCAGCAGTTCAGGCAGCTATTTTGAACGGAGAC 32215 Query 452050 AGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGT 452109 | | |||||||| | || || || | || ||||| | |||||||| |||||| | Sbjct 32216 A-AGGATGAAAAGATCCAGGACGTTTTGCTGGTGGATGTGGCTCCTCTATCGCTTGGAAT 32274 Query 452110 TGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAA 452169 |||||| || || ||| ||||||| || ||||| |||| | | ||||| || || Sbjct 32275 TGAAACTGCCGGAGGAGTGATGACCAAGCTAATTGAACGCAACAGTCGCATTCCATGCAA 32334 Query 452170 AAAGAGTCAAACATTTAGTACAGCAAGTG-ATAACCAACCAGGTGTAACTATTCAAGTGT 452228 | | |||||| || || | | | | | ||||||||||| || | ||||| |||| Sbjct 32335 GCAAACTCAAACCTTCTCAAC-GTACGCGGACAACCAACCAGGAGTCTCGATTCAGGTGT 32393 Query 452229 TTGAAGGAGAACGTGCAATGAC 452250 |||| |||||||| || ||||| Sbjct 32394 TTGAGGGAGAACGAGCCATGAC 32415 Score = 118 bits (130), Expect = 4e-21 Identities = 189/264 (72%), Gaps = 8/264 (3%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCT-AACAGGTTC 452049 ||||| || || || || || || ||||| |||||||| ||||||||| | ||| | | Sbjct 27950 AATCCGGACGAGGCCGTAGCTTACGGTGCAGCAGTTCAGGCAGCTATTTTGAACGGAGAC 27891 Query 452050 AGATGATGAAAAATT--AGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGA 452107 | | |||||||| | |||| | || | | || ||||| | |||||||| |||||| Sbjct 27890 A-AGGATGAAAAGATCCAGGACGTGTT--GCTGGTGGATGTGGCTCCTCTATCGCTTGGA 27834 Query 452108 GTTGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGT 452167 ||||||| || || ||| ||||||| || ||||| |||| | | ||||| || Sbjct 27833 ATTGAAACTGCCGGAGGAGTGATGACCAAGCTAATTGAACGCAACAGTCGCATTCCATGC 27774 Query 452168 AAAAAGAGTCAAACATTTAGTACAGCAAGTG-ATAACCAACCAGGTGTAACTATTCAAGT 452226 || | | |||||| || || | | | | | ||||||||||| || | ||||| || Sbjct 27773 AAGCAAACTCAAACCTTCTCAAC-GTACGCGGACAACCAACCAGGAGTCTCGATTCAGGT 27715 Query 452227 GTTTGAAGGAGAACGTGCAATGAC 452250 |||||| |||||||| || ||||| Sbjct 27714 GTTTGAGGGAGAACGAGCCATGAC 27691 Score = 116 bits (128), Expect = 1e-20 Identities = 186/262 (71%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCT-AACAGGTTC 452049 ||||| || || || || || || ||||| |||||||| ||||||||| | ||| | | Sbjct 41077 AATCCGGACGAGGCCGTAGCTTACGGTGCAGCAGTTCAGGCAGCTATTTTGAACGGAGAC 41136 Query 452050 AGATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGT 452109 | | |||||||| | || || || | || ||||| | |||||||| |||||| | Sbjct 41137 A-AGGATGAAAAGATCCAGGACGTTTTGCTGGTGGATGTGGCTCCTCTATCGCTTGGAAT 41195 Query 452110 TGAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGAACTTCTATTCCTTGTAA 452169 ||| || || || ||| ||||||| || ||||| |||| | | ||||| || || Sbjct 41196 TGAGACTGCCGGAGGAGTGATGACCAAGCTAATTGAACGCAACAGTCGCATTCCATGCAA 41255 Query 452170 AAAGAGTCAAACATTTAGTACAGCAAGTG-ATAACCAACCAGGTGTAACTATTCAAGTGT 452228 | | |||||| || || | | | | | ||||||||||| || | ||||| |||| Sbjct 41256 GCAAACTCAAACCTTCTCAAC-GTACGCGGACAACCAACCAGGAGTCTCGATTCAGGTGT 41314 Query 452229 TTGAAGGAGAACGTGCAATGAC 452250 |||| |||||||| || ||||| Sbjct 41315 TTGAGGGAGAACGAGCCATGAC 41336 >seq3122 Length=1344033 Score = 109 bits (120), Expect = 2e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || |||||||| || || || ||||| || || ||| | || Sbjct 596960 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGAACCCTCG 597019 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| |||| || || ||||||||||| ||||| || || |||||| Sbjct 597020 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGATAAGGAGGGAATCCCCCCAGATCAA 597079 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || || || ||||| | || ||| |||| || || Sbjct 597080 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAAC 597139 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 597140 ATCCAGAAGGAGTCTACCCTTCA 597162 Score = 100 bits (110), Expect = 1e-15 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || ||||| || || || || | || Sbjct 595364 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACCCTGGAGGTCGAGCCCTCG 595423 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||| || |||| || || ||||||||||| |||||||| || |||||| Sbjct 595424 GATACCATCGAGAACGTTAAGGCCAAGATCCAAGATAAGGAGGGAATTCCCCCAGATCAA 595483 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | |||||| | || || || || || ||||| | || ||| |||| || || Sbjct 595484 CAGCGTCTGATTTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAAC 595543 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 595544 ATCCAGAAGGAGTCGACCCTTCA 595566 Score = 98.7 bits (108), Expect = 4e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || ||||| || || ||| | || Sbjct 597188 ATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTCGAACCCTCG 597247 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||||| |||| ||| || ||||||||||| ||||| || || |||||| Sbjct 597248 GATACCATTGAAAACGTTAAGGCAAAGATCCAAGATAAGGAGGGAATCCCCCCAGATCAA 597307 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || | || ||||| | ||| | | || || ||| Sbjct 597308 CAGCGTCTGATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGTACTCTTTCAGACTACAAT 597367 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGT 391258 || | ||||| | || || || || || Sbjct 597368 ATCCAGAAGGAGTCCACTCTCCATTTGGT 597396 Score = 91.5 bits (100), Expect = 6e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || ||||||| || || || || | || || ||| | || Sbjct 596504 ATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACCATCACCTTGGAGGTCGAACCTTCG 596563 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| |||| || || || |||||||| ||||||||||| |||||| Sbjct 596564 GATACCATTGAGAACGTTAAGGCCAAGATCCAGGATAAGGAGGGAATTCCTCCAGATCAA 596623 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || ||| | || || || | || ||||| | || ||| |||| || || Sbjct 596624 CAGCGTCTGATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGTACCTTGTCGGACTACAAC 596683 Query 391230 ATTGATAAGGATGCAACACTTCA 391252 || | ||||| | || ||||| Sbjct 596684 ATCCAGAAGGAGTCGACCCTTCA 596706 >seq2724 Length=367895 Score = 86.0 bits (94), Expect = 2e-11 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || ||||| ||||| ||||| || || || || ||||| || || || | || Sbjct 202808 AATGCAGATCTTCGTGAAAACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGCCCTC 202749 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | ||| || | | || || || || || |||||||| || ||||| || || Sbjct 202748 GGACACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCA 202689 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || ||| | || ||| | || || || ||||||||||| | ||| || | || || || Sbjct 202688 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTTGAAGATGGTCGTACTCTGTCCGACTACAA 202629 Query 391229 TATTGATAAGGA 391240 ||| | ||||| Sbjct 202628 TATCCAGAAGGA 202617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975638129648468