Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq3071 168 8e-37 seq3141 96.9 4e-15 seq2926 84.2 3e-11 >seq3071 Length=929925 Score = 168 bits (186), Expect = 8e-37 Identities = 641/993 (65%), Gaps = 25/993 (3%) Strand=Plus/Minus Query 112006 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 112065 ||||||| || || ||||||| |||||| | ||||| | || ||| ||| | Sbjct 834233 TCTATCTGGAACCGTGGCACGGAGATATCTTTGAGTTTTTGGACTTGAAGAAAAACACCG 834174 Query 112066 GTGATGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 112123 | | ||||||| |||| | || || | |||| ||| || |||||||| ||||| || Sbjct 834173 GCAAGGAGGAGGTCCGCGCT--CGGGACATGTTCTACGCGCTGTGGATTCCGGATCTGTT 834116 Query 112124 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGG 112183 ||||||| |||| |||| | | | |||| ||| | || || || | ||||| Sbjct 834115 CATGAAGCGAGTCGAGGCTAACGAGGACTGGTGTCTGATGTGCCCGCACGACTGTCCCGG 834056 Query 112184 TCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAG 112243 ||| | || | |||||||||||| || || ||||| | ||||||| | ||| | Sbjct 834055 ACTCCCGGAAACTTGGGGTGAGGAGTTCGAGAAGCTGTACACGACGTACGAGAACGAAGG 833996 Query 112244 TCGGGCGAC-TGCG-ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAA 112301 || | || | || | ||| ||| ||| ||||| || || || |||| || Sbjct 833995 ACG--CTACATTCGTAAGGTCAAGGCTCAGGATCTGTGGTTCGCGATCATCGAGTCGCAG 833938 Query 112302 ACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAA 112361 |||||| || || || ||||| ||||| ||||| || |||| ||||| || || Sbjct 833937 GTCGAGACGGGAGTGCCGTACATGCTGTACAAGGACGCTTGCAACCGGAAGAGCAACCAG 833878 Query 112362 AAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGAC 112421 |||| | || || ||| |||| ||||| || || |||||| |||| | | | Sbjct 833877 CAGAACATCGGCACCATAAAGTGTTCGAACCTTTGCACGGAAATCGTGGAGTACTCGTCC 833818 Query 112422 AAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCA 112481 || || || | || ||||| ||| | || || ||||| || || || ||| | || Sbjct 833817 AAGGACGAAATTGCCGTGTGCAACTTGGCCTCGATCGCGGTCAACATGTTTGTCAAACCG 833758 Query 112482 GAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAAC 112541 || | || | | ||| | | || ||| | ||||| | |||| ||||||||||| Sbjct 833757 GACA---AGTCGTATGACTTCCAGAAGCTCAAGGAAGTCTCTAAAATAGTCACAAAAAAT 833701 Query 112542 CTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAAT 112598 || |||| | |||| || | || | ||||| ||| ||| | || || || Sbjct 833700 CTGAACAAAATTATCGACATCAACTACTACCCAGTTCCGGAGGCCAAGCG---CTCCAAC 833644 Query 112599 ATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGT 112658 ||| | ||||| || || || |||||||||| || | || || | ||||| || Sbjct 833643 ATGCGTCACCGCCCGATCGGAATCGGTGTCCAGGGAATGGCCGACGCGTTCATCCTGATG 833584 Query 112659 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATG 112718 ||| | | | || ||| ||||| | | | || || || || || || || Sbjct 833583 CGCTTCCCGTACGAGAGCGAGGAAGCCCAAAAGCTGAACCAGCAAATCTTCGAAACCATC 833524 Query 112719 TATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 112778 || ||| || || ||||| || | || | || ||| || || | || ||||| Sbjct 833523 TACTACGGTGCCCTCGAGGCAAGCTGTGAAATTGCCGAGAAGGACGGAACCTACGAAACG 833464 Query 112779 TTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTGAG 112835 | || || | ||| | || |||||| | || || | || |||||| |||| Sbjct 833463 TACGATGGCTGTCC-GGTTAGCAAGGGCATCCTGCAGTACGACATGTGGAACAAGGCCCC 833405 Query 112836 A-CCAAGCTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 112894 | || | || | ||||||| | | ||||||||| ||| || | || | || Sbjct 833404 ATCCGACCT---GTGGGACTGGGCCCCACTCAAGGAAAAAATCGCCAAGCACGGAGTCCG 833348 Query 112895 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 112954 ||| ||| | | || ||||||||||| || |||||||| |||||| | || || || Sbjct 833347 AAACTCCCTTCTCCTCGCCCCAATGCCAACCGCGTCCACCGCGCAAATCCTCGGCAACAA 833288 Query 112955 TGAATGCTTTGAACCCTACACGACGAACATCTA 112987 |||| ||| ||||| ||||| | ||| |||| Sbjct 833287 CGAATCCTTCGAACCGTACACCTCCAACGTCTA 833255 >seq3141 Length=1574671 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 102173 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 102232 ||||| ||||| | |||| || || || ||||| ||||||||| || ||| Sbjct 1345561 CTTTGGCGAGCGCGTGGTCGCTTTCGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTT 1345620 Query 102233 CTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 | ||| | || | |||||||||||||| || |||||||| || || |||||| |||| Sbjct 1345621 C-GCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTCTCGAACG 1345679 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||| ||||| || ||||||||||||||| || ||||| Sbjct 1345680 AGCTGATCTCGCGCGACGAGGGACTCCACACCGACTTTGC 1345719 >seq2926 Length=549490 Score = 84.2 bits (92), Expect = 3e-11 Identities = 166/243 (68%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 176021 TCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATTG 176080 ||||||||||| | ||||||||| |||||||||| ||| | || || ||||| ||| Sbjct 175986 TCCTTACCACCGGCCAAACGCGTACCGAACTGACCACCCGGGTACAGCAGGTTGATGTTG 175927 Query 176081 TTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCG-AGAGAGACT--TCA 176137 || || | ||| | |||||| ||||| || || || | | ||||||| ||| Sbjct 175926 TTGCTGCCGACAAAGTTCTGCGCCAAGTTGACGATGGT---CGAGCAAAGAGACTGCTCA 175870 Query 176138 CCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCA 176197 ||||| |||||||| | | || || || | | |||| ||| || || || | ||| Sbjct 175869 CCGTGATGGTACGCGGACATTTCCGCAACGGACCCGGCCAGCTGTGCGACCTTTACCTCC 175810 Query 176198 TCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCA 176257 |||| || | |||||| | | |||| ||||| ||||| ||||| | ||| Sbjct 175809 CGCTTGTCGTTACGCTTGAAACAGGTGAACATGACCTTCCGTTGACCCGGCTTCAACCCA 175750 Query 176258 TCC 176260 ||| Sbjct 175749 TCC 175747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620717795323120