Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_014969.1 Length=44055 Score E Sequences producing significant alignments: (Bits) Value seq3077 91.5 4e-14 >seq3077 Length=956384 Score = 91.5 bits (100), Expect = 4e-14 Identities = 173/252 (69%), Gaps = 2/252 (1%) Strand=Plus/Minus Query 1038 TACGGCCGCATCGCCCCTCGTTCGGGTCTGGCCGTCAAGTTTTTTATAGACGTGGGTGCC 1097 ||||| || | || || || |||||| ||||||||||| ||||| || || |||||| Sbjct 953824 TACGGTCGGGTGGCGCCCCGCTCGGGTTTGGCCGTCAAGAACTTTATCGATGTCGGTGCC 953765 Query 1098 GGGGTGGTGGATAGCGATTACCGCGGTATCGTGTCGGTGCTGCTGTTTAACTTTTCGGAG 1157 || || ||||| || || || || | | || |||| | ||||| ||| ||| || Sbjct 953764 GGCGTCGTGGACGAGGACTATCGTGGCAACCTGGGGGTGGTCCTGTTCAACCATTCCGAC 953705 Query 1158 CACAATTTTAACGTGCGCCGAGGTGACCGCATCGCCCAGATGATTTTGGAGCGTCACCTC 1217 || | || || ||| ||| || || || || || ||| | || | ||||| | || Sbjct 953704 AACGAGTTCAAGGTGGCCCGCGGCGATCGGATTGCGCAGTTTATCTGCGAGCGGATCTTC 953645 Query 1218 ACCCCGGATCTGGAAGAGCGCTTCGCTCTCGA-TCAGACGGAACGCGGCTCCGGGGGTTT 1276 ||| || ||||||||| | | | | || | ||||||||||| | || || || Sbjct 953644 TACCCCGAGCTGGAAGAG-GTTGCCAGTTTGACGGAAACGGAACGCGGTGCGGGAGGGTT 953586 Query 1277 CGGGTCCACGGG 1288 ||| |||||||| Sbjct 953585 CGGTTCCACGGG 953574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 140849096039534