Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq3125 118 1e-21 >seq3125 Length=1403514 Score = 118 bits (130), Expect = 1e-21 Identities = 185/261 (71%), Gaps = 8/261 (3%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||||| |||| | || |||| || ||||| ||||||||||| ||||| || | || Sbjct 488515 CAAAGACTTGGCGTGCCGTTGGGTTACGGAGGCCCTCATGCTGCCTTCTTCGC--CTGCA 488572 Query 153828 GAC--AAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTA--GATAGTGA 153883 ||| ||| | |||| ||| || |||||||| | ||| || | | || | || Sbjct 488573 GACAAAAGCTGACGAGATTGATTCCAGGCAGAATGATTGGT--GTTACGAGGGACATGGA 488630 Query 153884 AGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAA 153943 ||| | | || || | || || ||||| ||||| |||||||| ||||| ||||||| Sbjct 488631 TGGTCAGGACGCTTATCGTTTGGCCCTACAAACTAGGGAGCAGCACATCAGACGAGACAA 488690 Query 153944 AGCAACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGC 154003 ||| ||||| |||||||| || |||||||| || || || |||||| | | | ||||| Sbjct 488691 AGCTACCAGCAACATCTGTACTGCTCAGGCGCTTCTTGCCAATATGGCCGCCATGTATGC 488750 Query 154004 AGCATATCATGGTGCAGATGG 154024 | || |||||| | || || Sbjct 488751 AATTTACCATGGTCCCGAGGG 488771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579189841452640