Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2724 154 3e-32 seq3122 150 4e-31 >seq2724 Length=367895 Score = 154 bits (170), Expect = 3e-32 Identities = 160/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || |||||||| |||| ||||| | |||||||| Sbjct 202599 ACCAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGACCATCTTCA 202658 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||||||||| |||||||| ||||| || Sbjct 202659 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 202718 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| ||||| ||||||||||| || || || || || | ||||| Sbjct 202719 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAGAGTGATGGTCTTG 202778 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||| ||||| ||||| | |||||| Sbjct 202779 CCGGTCAGGGTTTTCACGAAGATCTGCATT 202808 Score = 140 bits (154), Expect = 7e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| || ||||| || || || ||||| |||| ||||| | || || |||||||| Sbjct 201692 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTACGACCGTCCTCGAGCTG 201751 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || || || ||||||||||| |||||||| ||||| || || || Sbjct 201752 CTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGGATCTT 201811 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||| ||||||||||| || || || | ||| | ||||| || || Sbjct 201812 GGCCTTCACGTTCTCGATGGTGTCCGAGGGCTCAACCTCCAAGGTGATGGTCTTACCGGT 201871 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 || || || || || | |||||| Sbjct 201872 CAGGGTCTTCACAAAGATCTGCATT 201896 Score = 129 bits (142), Expect = 1e-24 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 |||||| || ||||| || || || |||||||| | |||| || | || || || | || Sbjct 202832 GTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAG-GTACGACCGTCCTCCAACT 202890 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || |||||||| || || || |||||||| ||||| || || |||||||| || | Sbjct 202891 GCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGGATCT 202950 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | |||||||||||| ||||||||||| || || || | |||| ||||| || | Sbjct 202951 TAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCCAAAGTAATGGTCTTGCCGG 203010 Query 195116 TCAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 203011 TCAGGGTCTTCACGAAGATCTGCAT 203035 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || |||||||| | ||| || | || || || Sbjct 203055 ACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCGTCCTCC 203114 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || ||||| || || || || |||||||| || || || || ||||| || Sbjct 203115 AACTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGCGGGATTCCCTCCTTGTCCTGG 203174 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| ||||| ||||||||||| || || || ||||| | ||||| Sbjct 203175 ATCTTAGCCTTGACATTCTCGATGGTGTCCGACGGCTCGACCTCGAGGGTGATGGTCTTA 203234 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | |||||| Sbjct 203235 CCGGTCAAAGTCTTGACGAAGATTTGCAT 203263 Score = 122 bits (134), Expect = 2e-22 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCT 194995 |||||| || || || || || || |||||||| | |||| || | ||||| ||||||| Sbjct 201920 GTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGACAAG-GTACGACCATCCTCGAGCT 201978 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || ||||||||||| || || || ||||| || || || || ||||| || || | Sbjct 201979 GCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGGATCT 202038 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 | |||||| ||||| || || || || ||| || || || |||| ||||| || | Sbjct 202039 TGGCCTTGACATTCTCGATCGTATCGGACGGTTCGACCTCCAGAGTAATGGTCTTACCGG 202098 Query 195116 TCAAAGTTTTTACGAACACTTGCATT 195141 ||| || || ||||| | |||||| Sbjct 202099 TCAGCGTCTTCACGAAGATCTGCATT 202124 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || ||||| || || || |||||||| | ||| || | || || || Sbjct 202143 ACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCGTCCTCC 202202 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || ||||||||||| || || || ||||| || || || || ||||| || Sbjct 202203 AACTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 202262 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| ||||| ||||||||||| || || || ||||| | ||||| Sbjct 202263 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTTA 202322 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 202323 CCGGTCAGGGTCTTCACGAAGATCTGCAT 202351 Score = 116 bits (128), Expect = 8e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || ||||| || || || || || || |||||||| | |||||| | || || ||| Sbjct 202371 ACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTCG 202430 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 || ||||| || ||||||||||| || || || ||||| || || || || ||||| || Sbjct 202431 AGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 202490 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| || || || ||| || || || || || | ||||| Sbjct 202491 ATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCGACCTCCAGAGTGATGGTCTTG 202550 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 202551 CCAGTCAGTGTCTTCACGAAGATCTGCAT 202579 >seq3122 Length=1344033 Score = 150 bits (166), Expect = 4e-31 Identities = 155/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||||||||| || || |||||||| || | |||||| | ||||| || | |||| Sbjct 597390 TGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAAAGAGTACGACCATCCTCCAACTGC 597331 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 ||||| |||||||| || || ||||| ||||| || || || || || ||||| || ||| Sbjct 597330 TTACCAGCGAAGATCAGACGCTGTTGATCTGGGGGGATTCCCTCCTTATCTTGGATCTTT 597271 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| ||||| |||||||| ||||| ||| || || || || | ||||| || ||| Sbjct 597270 GCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACCTCCAGAGTGATGGTCTTGCCAGTC 597211 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 ||||| || ||||| | ||||| Sbjct 597210 AAAGTCTTCACGAAGATCTGCAT 597188 Score = 145 bits (160), Expect = 2e-29 Identities = 156/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 || ||||||||||| || || || ||||| || | |||| || | ||||| || ||||| Sbjct 596022 TGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCGACAAG-GTACGACCATCCTCCAGCTG 595964 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| |||||||| || || ||||| |||||||| || || || || || ||||| || Sbjct 595963 CTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTTATCCTGAATCTT 595904 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||| ||||| |||||| ||| || || ||||| | ||||| || || Sbjct 595903 GGCCTTAACGTTCTCGATGGTATCCGAAGGTTCGACCTCCAGGGTGATGGTCTTGCCAGT 595844 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||| || ||||| | ||||| Sbjct 595843 CAGAGTCTTGACGAAGATCTGCAT 595820 Score = 145 bits (160), Expect = 2e-29 Identities = 162/214 (76%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 || ||| || ||||| || ||||| || || || ||||| || | |||| || | |||| Sbjct 596944 CAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAAG-GTACGACCAT 596886 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 | || ||||||||||| |||||||| || || ||||| |||||||| || || || || | Sbjct 596885 CCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTTAT 596826 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 | || || || ||| ||||| |||||||| ||||| ||| || || ||||| | | Sbjct 596825 CCTGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACCTCCAGGGTGATGG 596766 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || |||||||| || ||||| | |||||| Sbjct 596765 TCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 596732 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || ||||| || ||||| || || || ||||| || | |||| || | ||||| || Sbjct 595572 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAG-GTACGACCATCCTC 595514 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| ||||| || || || ||||| ||||| ||||| || || || ||||| Sbjct 595513 CAGCTGCTTACCAGCGAAAATCAGACGCTGTTGATCTGGGGGAATTCCCTCCTTATCTTG 595454 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| |||||||| ||||| ||||| || || || ||||||| ||||| Sbjct 595453 GATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACCTCCAGGGTAATGGTCTT 595394 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || ||||| | ||||| Sbjct 595393 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 595364 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || ||||| || ||||| || || || ||||| || | |||| || | ||||| || Sbjct 596712 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAG-GTACGACCATCCTC 596654 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||||||| |||||||| || || ||||| ||||||||||| || || || || || Sbjct 596653 CAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCCTG 596594 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| |||||||||||||| |||||| ||| || || | ||| | ||||| Sbjct 596593 GATCTTGGCCTTAACGTTCTCAATGGTATCCGAAGGTTCGACCTCCAAGGTGATGGTCTT 596534 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | ||||| Sbjct 596533 GCCAGTCAAAGTCTTCACGAAGATCTGCAT 596504 Score = 141 bits (156), Expect = 2e-28 Identities = 159/210 (76%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || ||||| || ||||| || || || ||||| || | |||| || | ||||| || Sbjct 597624 ACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGACAAG-GTACGACCATCCTC 597566 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| |||||||| || || ||||| |||||||| || || || || || || Sbjct 597565 CAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTTATCCTG 597506 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| ||||| |||||||| ||||| || || || ||||||| ||||| Sbjct 597505 GATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGCTCGACCTCGAGGGTAATGGTCTT 597446 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| |||||||| || ||||| | ||||| Sbjct 597445 TCCAGTCAAAGTCTTGACGAAGATCTGCAT 597416 Score = 132 bits (146), Expect = 1e-25 Identities = 157/210 (75%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTC 194990 || || ||||| || ||||| || || || ||||| || | |||| || | || || || Sbjct 597852 ACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAAG-GTACGACCGTCCTC 597794 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||||||||| |||||||| || || ||||| |||||||| || || || || || || Sbjct 597793 CAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTTATCCTG 597734 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||| ||||| |||||||| ||||| ||| || || || || | ||||| Sbjct 597733 GATTTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACCTCCAGAGTGATGGTCTT 597674 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | ||||| Sbjct 597673 GCCAGTCAAAGTCTTGACGAAGATCTGCAT 597644 Score = 131 bits (144), Expect = 4e-25 Identities = 159/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCAT 194986 || ||| || ||||| || ||||| || || || ||||| || | |||| || | |||| Sbjct 597172 CAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAAG-GTACGACCAT 597114 Query 194987 CTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGT 195046 | || ||||||||||| |||||||| || || ||||| ||||| || || || || || | Sbjct 597113 CCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGGGGGATTCCCTCCTTAT 597054 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCG 195106 |||| || || ||| ||||| |||||||| ||||| ||| || || || || | | Sbjct 597053 CTTGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACCTCCAGAGTGATGG 596994 Query 195107 TCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||| || |||| ||| || ||||| | ||||| Sbjct 596993 TCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 596960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109436523496157