Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2849 132 4e-26 >seq2849 Length=471161 Score = 132 bits (146), Expect = 4e-26 Identities = 240/346 (69%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || ||||||||||| || ||||||| ||| || || | ||||||||| || || || ||| Sbjct 133939 AGTCCGGTGACGTGGGCAATCATGTGCGTAAGCAGTGCGTAGCTGGCAATATTGAACGGT 133998 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 ||||| || ||||||||| | || | ||||| || || || || | ||||||||| Sbjct 133999 ACCCCCAGGCCCATGTCCGCTGATCGTTGGTAAAGTTGGCATGACAATTCTCCGTCGGAA 134058 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGG 30048 ||| | |||||| | |||||| || || |||||||| | | ||| ||| Sbjct 134059 ACGAAGAACTGAGCTAAACAGTGGCATGGTGGTAGAGCCATTTGCGGAATGTCCACCGGG 134118 Query 30049 TTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCG 30108 ||||| |||| || ||| ||||| | || || ||| || | ||| ||| | | Sbjct 134119 TTCCAAGCGCTCATGATAATGCGTCGATCGGTGGGATTGGTCTTTATGCGGTTTATTAC- 134177 Query 30109 TTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACTCTG 30166 || || ||||| || | ||| || | ||| || | | ||||| | || | || Sbjct 134178 TTCAGCAAGCTGGTCGATCCCTTCGCCGGTGTAATCATCATCGCATGT-TTTATATTTTG 134236 Query 30167 CTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 |||||||||| | ||| ||||| |||||||| || || ||||| || Sbjct 134237 CTCCGAAATGACGCCATTGGAATCCGTACACAGGACCTAGGTCACC 134282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408601808334383