Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3071 295 1e-74 seq3141 208 1e-48 >seq3071 Length=929925 Score = 295 bits (326), Expect = 1e-74 Identities = 1003/1546 (65%), Gaps = 74/1546 (5%) Strand=Plus/Plus Query 212895 TTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAG 212954 |||| || || ||||||| | |||||| || || || ||||| | || | ||| | | Sbjct 833201 TTGAGGAGATGGTGGTTGACGACCTGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACG 833260 Query 212955 TTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTG 213014 || || ||||| || |||| | |||||||| || || || || || ||| || || Sbjct 833261 TTGGAGGTGTACGGTTCGAAGGATTCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTT 833320 Query 213015 GGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGC 213074 ||||| || || | || || ||| | |||||||||| | |||| | || Sbjct 833321 GGCATTGGGGCGAGGAGAAGGGAGTTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGT 833380 Query 213075 TCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGC 213134 ||||||||||| | | || || ||| || |||||||||| ||||| Sbjct 833381 GGGGCCCAGTCCCACAGGTCGGATGGGGCCTTGT---------TCCACATGTCGTACTGC 833431 Query 213135 AAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCC 213194 | |||||| ||||| || || | ||| | ||| | ||||| || | || || ||| Sbjct 833432 AGGATGCCCTTGCTAACCGGACAGCCATCGTACGTTTCGTAGGTTCCGTCCTTCTCGGCA 833491 Query 213195 AGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGC 213254 | || ||| |||| |||||| |||||||||||||||| || || | | ||| ||| Sbjct 833492 ATTTCACAGCTTGCCTCGAGGGCACCGTAGTAGATGGTTTCGAAGATTTGCTGGTTCAGC 833551 Query 213255 TTCTTGGCCTC-TGG-----GGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCC 213308 || | ||| || | | | ||| |||| |||||| ||| ||| | || ||| Sbjct 833552 TTTTGGGCTTCCTCGCTCTCGTACGGGAAGCGCATCAGGATG------AACGCGTCGGCC 833605 Query 213309 AGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCC 213365 | |||||||| ||||| ||||| || | ||| | || ||| || ||||| |||| Sbjct 833606 ATTCCCTGGACACCGATTCCGATCGGGCGGTGACGCATGTTGGAGCGCTTGGC---CTCC 833662 Query 213366 TCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTG 213425 | ||||| ||||| |||||| || ||||| || || ||| | | ||| | | Sbjct 833663 GGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGATTTTTTGTGACTATTTTAGAG 833722 Query 213426 ACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC---ACAAACTCAGGC 213482 || | || | || || ||| | || | |||| | |||||| Sbjct 833723 ACTT---CCTTGAGCTTCTG---GAAGTCATACGACTTGTCCGGTTTGACAAACATGTTG 833776 Query 213483 AGGGCGATGCTGGCCAGGTTGCAAACGGCCA---CCTCCTGAGAGTCTGTGTACTCCATG 213539 | ||||| ||||| |||||| ||||| | | |||| || | |||||||| | Sbjct 833777 ACCGCGATCGAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGAC---GAGTACTCCACG 833833 Query 213540 ATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCG 213599 || || ||||| ||||| || |||||||| | |||||| ||||| ||| | Sbjct 833834 ATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGCTGGTTGCTCTTCCGG 833893 Query 213600 TTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATC 213659 ||| || |||||||| |||||||| || || ||||| | ||| ||| | | ||| Sbjct 833894 TTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGACCTGCGACTCGATGATC 833953 Query 213660 TGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA 213718 | ||| || | |||| ||||||||| || || ||| | ||| |||||| Sbjct 833954 GCGAACCACAGAT-CCTGAGCCTTGACCTTACGAATGT-AGCGTCCTTCGTT--CTCGTA 834009 Query 213719 CTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCC---AGTCCCGGACAGGA 213775 | ||| |||| | ||| || | ||||| | ||| ||||| |||||| Sbjct 834010 CGTCGTGTACAGCTTCTCGAACTCCTCACCCCAAG---TTTCCGGGAGTCCGGGACAGTC 834066 Query 213776 -TGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCG 213834 |||||| ||||| || | ||||||| ||| | | ||||| || ||||||||| |||| Sbjct 834067 GTGCGGG-CACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCATGAACAGATCCG 834125 Query 213835 GGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGC 213894 | | |||||||||| ||||| ||||| | | ||| ||| || | |||||| Sbjct 834126 GAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCCGGTGTTTTTCT 834185 Query 213895 GCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGC 213954 || || | ||| |||||||| || |||||||||| |||| ||||| ||||| || | Sbjct 834186 TCAAGTCCAAAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGATCGCAAACGCCC 834245 Query 213955 CCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGA 214011 | |||| |||| ||||||||||| || || ||| ||||| | | | ||| | Sbjct 834246 CGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTAAACCCTCAGCA 834305 Query 214012 CGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCA 214071 || ||||||||||| || ||||| ||||| || || |||| ||| |||| | Sbjct 834306 TCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGCCCTTCGCCCGGA 834365 Query 214072 GG--TTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCT 214129 | ||| ||| | | || || ||||| || |||||||||||| ||||| || | Sbjct 834366 TGCAGTGCACATTCACA--CCGATTCCACCCGCCGACTTGGAGATCAACGCGCACTGCTT 834423 Query 214130 CACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGA 214189 || || || || ||| | || || || || | | ||| || |||||| ||| Sbjct 834424 CAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGGAAGCACGACGA 834483 Query 214190 GAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTT 214249 ||||| || | || | | | || | || || ||| || | | || Sbjct 834484 CAGCTGCGGACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGCGTAAAGTACCG 834543 Query 214250 GTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAG 214309 | || || || |||| ||||| | | | | | ||||| || ||| || | Sbjct 834544 CTCCGACAGCAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCCGTGAATGCCAAC 834603 Query 214310 AGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGGGCCCTTG----- 214364 || || ||||||||||||||| || | ||| | |||| ||||||| Sbjct 834604 CGCCACCCGCATCAGCATGTGCTGCGGACGCTCCA--CCACCTT----GCCCTTGATCTT 834657 Query 214365 -AGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTAG 214409 |||||||| || |||||||| |||||||| ||||||||| |||| Sbjct 834658 CAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAG 834703 >seq3141 Length=1574671 Score = 208 bits (230), Expect = 1e-48 Identities = 365/528 (69%), Gaps = 5/528 (1%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 ||||| || || || | ||||| |||||||| ||||| ||||| | ||||||| |||| Sbjct 1346010 TGGTACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTTCCCTCGAGCGAGATGAACTCC 1345951 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 |||||| ||| ||||| ||||| || | | | ||||| || ||| ||| Sbjct 1345950 ATGAAGCTGAACGGGTTCTTGGTGTTGTAGATCTTTTCGTTGCCCAGCTCGAGCAGGAGG 1345891 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGAC 48019 |||||||||| |||||||||| | ||||| || | ||||||||| | ||| Sbjct 1345890 CGATCCGCGACAAACTCGATGTACTGCGACATCAGCTCGCAGTTCATGCCGAGCAGGTCG 1345831 Query 48020 ACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGC 48079 ||||||| || || ||||| ||||||| ||| || |||||||| | | || | Sbjct 1345830 ACGGGCAGGGCTTTCGTGAGGAACTCCTGCTCGATGACGACGGCTTCGCGGATGATTTCG 1345771 Query 48080 TTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGT-GCTTGGCATAGAGCATGCAGGCAAA 48138 ||||| | ||||| || | | ||||| || ||| ||| |||||||| Sbjct 1345770 AGCACGCGTTCTTTGGAGGGCTTCTGGACCAGGTAGCGGAACAT-GAGA---CAGGCAAA 1345715 Query 48139 GTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCAT 48198 ||| |||| | || ||||| || ||| ||| |||| |||||| || || ||||| Sbjct 1345714 GTCGGTGTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTCAGGCCGGGCAT 1345655 Query 48199 GACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTC 48258 || || | || ||||||||||| || | |||||| ||| ||||||||||||||| Sbjct 1345654 GAGGCCACGCTTCTTGAGCCAGAAGATGGACGCGAAGCTGCCGCTGAAGAAGATGCCCTC 1345595 Query 48259 CACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGA 48318 || || ||||| ||| | | ||| || || |||| |||| ||||||||| Sbjct 1345594 GACGGCGGCGAAAGCGACCACGCGCTCGCCAAAGTTGGCGTGCTTGCTCGAGATCCAGTT 1345535 Query 48319 AAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 | ||||||||| ||||| ||||| | || |||| |||||| || || Sbjct 1345534 CATCGCCCAGTCAGCCTTTTTCTTCACACAGGGCAGCGTCTCGATCGC 1345487 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| |||||| ||||| || ||||||||||| ||||||||| | ||||| Sbjct 1345256 GTACATCTCGCTGTGCACGTTCTCCATCGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1345197 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 ||||||||| || | ||| | ||| | ||| ||||| || || || || || || Sbjct 1345196 CGTCACCTGCACCTCCTGGCTGAACCGCTCGACCAGGTTCTCGTTCACGATGCCGTCCGA 1345137 Query 48544 AGCAGCAAAGAAGGCAAGGACATG 48567 ||| || |||||||| || || || Sbjct 1345136 AGCGGCGAAGAAGGCCAGCACGTG 1345113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931495876368640