Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3071 244 2e-59 seq3141 165 2e-35 >seq3071 Length=929925 Score = 244 bits (270), Expect = 2e-59 Identities = 855/1310 (65%), Gaps = 56/1310 (4%) Strand=Plus/Plus Query 221357 ACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTGC 221416 ||||||| |||||||||| ||||||| |||| | ||||| | || | ||| Sbjct 833447 ACCGGACAGCCATCGTACGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACA-GCTTGC 833505 Query 221417 GTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGG----CCT 221471 || |||||| ||| ||||||||| || ||||| || ||| || || |||| ||| Sbjct 833506 CTCGAGGGCACCGTAGTAGATGGTTTCGAAGATTTGCTGGTTCAG-CTTTTGGGCTTCCT 833564 Query 221472 CGGGAG---AAGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTC 221528 || | | |||| |||| ||| || ||| | ||||||||| |||||| || | Sbjct 833565 CGCTCTCGTACGGGAAGCGCAT---CAGGAT--GAACG-CGTCGGCCATTCCCTGGACAC 833618 Query 221529 CGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCG-CTTCTGGCACGGGATAAAAG 221587 |||| ||||| || | ||| | | ||||||| ||| | | || || || || || || Sbjct 833619 CGATTCCGATCGGGCGGTGACGCATGTTGGA-GCGCTTGGCCTCCGGAACTGGGTAGTAG 833677 Query 221588 TTGACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTC 221647 |||| |||||| | ||||| || || |||| | |||| || || | |||||| Sbjct 833678 TTGATGTCGATAATTTTGTTCAGATTTTTTGTGACTATTTTAGAGACTTCCTTGAGCTTC 833737 Query 221648 TGGTGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCA 221707 ||| | || ||| | | |||| ||||| ||| | || Sbjct 833738 TGGAAGTCATACG---ACTTGTCC------------GGTTTGACAAACATGTTGACCGCG 833782 Query 221708 ACGCTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTA 221767 | ||||| ||| |||||||| | ||||||||| | |||| | ||| || || Sbjct 833783 ATCGAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGACGAGTACTCCACGATTTCCGTG 833842 Query 221768 CAGAGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG 221827 || ||||| ||||| ||||| || | || | || || ||| || ||| |||| Sbjct 833843 CAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCG 833902 Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887 |||||||| ||||| | || | || ||||| | ||| | | | | ||| | ||| Sbjct 833903 TCCTTGTACAGCATGTACGGCACTCCCGTCTCGACCTGCGACTCGATGATCGCGAACCAC 833962 Query 221888 AGTTCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT-TCATACCCGGTAT 221945 || || ||| || | ||| | | || || | | || || || || ||| || | Sbjct 833963 AGATC-CTGAGCCTTGACCTTAC----GAATGTAGCGTCCTTCGTTCTCGTACGTCGTGT 834017 Query 221946 AGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACAC 222004 | ||| | || |||| ||||| | | || || || ||||| | ||||| ||| Sbjct 834018 ACAGCTTCTCGAACTCCTCACCCCAAGTTTCCGGGAGTCCGGGACAGTCGTGCGGG-CAC 834076 Query 222005 ATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGC 222064 ||||||| ||||| || ||| | | ||| | || |||||| || ||||| ||||||||| Sbjct 834077 ATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCATGAACAGATCCGGAATCCACAGC 834136 Query 222065 GCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAA 222124 || | || | || | | || ||||||| |||| |||||||| ||| |||||| Sbjct 834137 GCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAAGTCCAAA 834196 Query 222125 AACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTG 222184 |||||||| || || |||||||||| |||||||||| || | || ||||| |||||| Sbjct 834197 AACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGATCGCAAACGCCCCGGGCCGCTTG 834256 Query 222185 TTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGT 222244 ||||| ||||| || || || | || |||| | | | || |||| ||||| Sbjct 834257 TTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTAAACCCTCAGCATCGGCACCAGC 834316 Query 222245 CCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GC 222303 ||||| || ||||| || || |||||||| || |||| || | | | || Sbjct 834317 CCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGCCCTTCGCCC---GGATGCAGTGC 834373 Query 222304 AGA--CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCC 222361 | | || ||||| ||||| || || ||||||| ||||| ||| || ||||| Sbjct 834374 ACATTCACACCGATTCCACCCGCCGACTTGGAGATCAACGCGCACTGCTTCAGCGTGTCG 834433 Query 222362 ATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTG-AGA 222420 || || || ||| || || | | ||| ||| || || ||||||| ||| || Sbjct 834434 TAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGGAAGCACGACGACAGCTGCGGA 834493 Query 222421 TTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACAT 222480 | | | | || ||||| || || |||||| |||||||| | | |||| Sbjct 834494 CGCCGCGTGGCCGCCG-CAAACATGGTCGGCGAGGCGTGCGTAAAGTACCGCTCCGACAG 834552 Query 222481 CAGATCGTACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCT 222540 ||| | ||||||||| | | | | | |||| ||||||||| | || | Sbjct 834553 CAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCCGTGAATGCCAACCGCCACCCG 834612 Query 222541 CATGTACATGTACTGGGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGA 222597 ||| ||||| ||| || | || |||| ||||| || || ||||||||||| Sbjct 834613 CATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTT-GATCT--TCAGCAGGTACGA 834669 Query 222598 TTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGT 222647 ||||| |||||||| |||||||||||| | ||||||| | | ||| Sbjct 834670 CCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTCCCGGTCGT 834719 >seq3141 Length=1574671 Score = 165 bits (182), Expect = 2e-35 Identities = 325/489 (66%), Gaps = 3/489 (1%) Strand=Plus/Plus Query 25834 TGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTT 25893 ||||| ||||| |||||| ||| || ||| | ||||||||||| |||| || || Sbjct 1345526 TGGGCGATGAACTGGATCTCGAGCAAGCACGCCAACTTTGGCGAGCGCGTGGTCGCTTTC 1345585 Query 25894 GCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAG 25953 || || || ||||||||||| |||||||| || ||| ||||||||||||||||| || Sbjct 1345586 GCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTTCGCGTCCATCTTCTGGCTCAAGAAG 1345645 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || ||||||||| ||| ||| || |||||||| ||| | |||||||| ||| Sbjct 1345646 CGTGGCCTCATGCCCGGCCTGACCTTCTCGAACGAGCTGATCTCGCGCGACGAGGGACTC 1345705 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAAGAG 26073 |||| || |||||||| || | | | || || || |||| || || || |||| Sbjct 1345706 CACACCGACTTTGCCTGTCTCATGTTC---CGCTACCTGGTCCAGAAGCCCTCCAAAGAA 1345762 Query 26074 ACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNN 26133 ||| | |||||| || || || | |||||| ||||||| | Sbjct 1345763 CGCGTGCTCGAAATCATCCGCGAAGCCGTCGTCATCGAGCAGGAGTTCCTCACGAAAGCC 1345822 Query 26134 NNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTATGTG 26193 | ||||||||| | || ||| || ||||| |||| ||| Sbjct 1345823 CTGCCCGTCGACCTGCTCGGCATGAACTGCGAGCTGATGTCGCAGTACATCGAGTTTGTC 1345882 Query 26194 GCCGACCATCTGCTGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAACCCGTTC 26253 || || | || ||| | ||||||| || | |||||| || ||||||||| Sbjct 1345883 GCGGATCGCCTCCTGCTCGAGCTGGGCAACGAAAAGATCTACAACACCAAGAACCCGTTC 1345942 Query 26254 GACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGC 26313 ||| ||||| ||| ||| | || || ||||| |||||||| || |||| ||||||| Sbjct 1345943 AGCTTCATGGAGTTCATCTCGCTCGAGGGAAAGACGAACTTCTTCGAGAAGAAGGTCGGC 1346002 Query 26314 GACTATCAA 26322 || || ||| Sbjct 1346003 GAGTACCAA 1346011 Score = 107 bits (118), Expect = 4e-18 Identities = 161/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTAC--GCTCTATCC 25569 |||||| | ||| ||| | |||||| | |||||| ||| || |||| | |||| | | Sbjct 1345031 CTGGACGGTCGAGGAGGTCGATCTGTCGAAGGACTTGGGCGACTGGGAGAAGCTCAAGTC 1345090 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | ||| |||| ||| || | ||||| |||| ||||| || || || || || || Sbjct 1345091 G--GGTGAGAAGCACTTTATCTCGCACGTGCTGGCCTTCTTCGCCGCTTCGGACGGCATC 1345148 Query 25630 GTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGT 25689 ||||||||||| ||| |||| | |||| | ||| |||||| |||||| || Sbjct 1345149 GTGAACGAGAACCTGGTCGAGCGGTTCAGCCAGGAGGTGCAGGTGACGGAGGCGCGCTGC 1345208 Query 25690 TTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 |||||||| |||||||| || || || || |||||| ||| |||| Sbjct 1345209 TTCTACGGCTTCCAGATCGCGATGGAGAACGTGCACAGCGAGATGTA 1345255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928807982914240