Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2856 158 8e-33 seq3122 100 2e-15 >seq2856 Length=487875 Score = 158 bits (174), Expect = 8e-33 Identities = 396/589 (67%), Gaps = 12/589 (2%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| ||||| || ||||| || || || ||| || || | || | || |||| || Sbjct 31078 TGCGATTGGAATCGATTTGGGCACGACGTACTCGTGCGTCGGAGTGTTCCAGCATGGCAA 31137 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||| || || |||||||| || || | || || || ||||| | ||| | Sbjct 31138 GGTTGAAATCATCGCGAATGACCAGGGCAACCGGACGACTCCCAGCTATGTGGCCTTTTC 31197 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG--CATCTAATCCTGTT 474505 || || |||| | ||||| ||||| || ||| | | || || ||| || || Sbjct 31198 GGACACGGAACGGTTGATTGGCGATGCGGC-AAAGAACCAGGTGGCCATG-AACCCACGC 31255 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || | || ||||| || |||||||||| || || || ||| | | |||| Sbjct 31256 AACACGGTCTTCGATGCCAAGCGATTGATTGGCCGCCGATTCGACGATCCGAAGATCCAG 31315 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGA- 474624 |||| || || ||||| || ||||||| | || ||||| |||||| | || || Sbjct 31316 GCTGACTTGAAGCACTGGCCGTTCCAGGTGATCAGTGACGGTGGCAAACCAAAGATCGAG 31375 Query 474625 AGCAA-TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | | || ||| ||| ||| | |||| |||||||| | || ||| ||||| | Sbjct 31376 ATCGAGTTCAA--AGGCGAACGTAAGCGATTTGCACCGGAAGAGATCAGTTCCATGGTGT 31433 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGT 474741 | |||| ||||| |||| || ||| | ||||| || |||| | | | | || || Sbjct 31434 TGACCAAGATGAAGGAAACTGCTGAGG-CGTATCTGGG-CAAGTCGGTCAAGAACGCGGT 31491 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || || ||||||||||| || || || || ||||| ||| Sbjct 31492 CATCACCGTTCCGGCTTACTTCAACGATTCTCAACGCCAGGCCACCAAGGATGCTGGAGC 31551 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || || || || ||| | | |||||||| |||||||| ||||| ||| | || || Sbjct 31552 CATCGCTGGGCTGAACGTTATGAGAATTATTAACGAACCAACGGCAGCGGCATTGGCCTA 31611 Query 474862 TGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGAT 474910 || || || ||||| | | |||| |||||| | ||||| ||| Sbjct 31612 CGGACTGGACAAGAACCTTAAAGGAGAACGAAATGTGCTGATCTTCGAT 31660 Score = 158 bits (174), Expect = 8e-33 Identities = 396/589 (67%), Gaps = 12/589 (2%) Strand=Plus/Plus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| ||||| || ||||| || || || ||| || || | || | || |||| || Sbjct 39999 TGCGATTGGAATCGATTTGGGCACGACGTACTCGTGCGTCGGAGTGTTCCAGCATGGCAA 40058 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||| || || |||||||| || || | || || || ||||| | ||| | Sbjct 40059 GGTTGAAATCATCGCGAATGACCAGGGCAACCGGACGACTCCCAGCTATGTGGCCTTTTC 40118 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG--CATCTAATCCTGTT 474505 || || |||| | ||||| ||||| || ||| | | || || ||| || || Sbjct 40119 GGACACGGAACGGTTGATTGGCGATGCGGC-AAAGAACCAGGTGGCCATG-AACCCACGC 40176 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || | || ||||| || |||||||||| || || || ||| | | |||| Sbjct 40177 AACACGGTCTTCGATGCCAAGCGATTGATTGGCCGCCGATTCGACGATCCGAAGATCCAG 40236 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGA- 474624 | || || || ||||| || ||||||| | || ||||| |||||| | || || Sbjct 40237 GCCGACTTGAAGCACTGGCCGTTCCAGGTGATCAGTGACGGTGGCAAACCAAAGATCGAG 40296 Query 474625 AGCAA-TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | | || ||| ||| ||| | |||| |||||||| | || ||| ||||| | Sbjct 40297 ATCGAGTTCAA--AGGCGAACGTAAGCGATTTGCACCGGAAGAGATCAGTTCCATGGTGT 40354 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGT 474741 | |||| ||||| |||| || ||| | ||||| || |||| | | | | || || Sbjct 40355 TGACCAAGATGAAGGAAACTGCTGAGG-CGTATCTGGG-CAAGTCGGTCAAGAACGCGGT 40412 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || || ||||||||||| || || || || ||||| ||| Sbjct 40413 CATCACCGTTCCGGCTTACTTCAACGATTCTCAACGCCAGGCCACCAAGGATGCTGGAGC 40472 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || || || || ||| | | |||||||| |||||||| ||||| ||| | ||||| Sbjct 40473 CATCGCTGGGCTGAACGTTATGAGAATTATTAACGAACCAACGGCAGCGGCATTGGCTTA 40532 Query 474862 TGGTCTTGATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGAT 474910 || || || ||||| | | |||| |||||| | ||||| ||| Sbjct 40533 CGGACTGGACAAGAACCTTAAAGGAGAACGAAATGTGCTGATCTTCGAT 40581 Score = 150 bits (166), Expect = 1e-30 Identities = 374/555 (67%), Gaps = 12/555 (2%) Strand=Plus/Minus Query 474328 TGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAA 474387 ||| ||||| || ||||| || || || ||| || || | || | || |||| || Sbjct 29028 TGCGATTGGAATCGATTTGGGCACGACGTACTCGTGCGTCGGAGTGTTCCAGCATGGCAA 28969 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 || ||||| || || |||||||| || || | || || || ||||| | ||| | Sbjct 28968 GGTTGAAATCATCGCGAATGACCAGGGCAACCGGACGACTCCCAGCTATGTGGCCTTTTC 28909 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG--CATCTAATCCTGTT 474505 || || |||| | ||||| ||||| || ||| | | || || ||| || || Sbjct 28908 GGACACGGAACGGTTGATTGGCGATGCGGC-AAAGAACCAGGTGGCCATG-AACCCACGC 28851 Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 || || | || ||||| || |||||||||| || || || ||| | | |||| Sbjct 28850 AACACGGTCTTCGATGCCAAGCGATTGATTGGCCGCCGATTCGACGATCCGAAGATCCAG 28791 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGA- 474624 | || || || ||||| || ||||||| | || ||||| |||||| | || || Sbjct 28790 GCCGACTTGAAGCACTGGCCGTTCCAGGTGATCAGTGACGGTGGCAAACCAAAGATCGAG 28731 Query 474625 AGCAA-TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | | | | || ||| ||| ||| | |||| |||||||| | || ||| ||||| | Sbjct 28730 ATCGAGTTCAA--AGGCGAACGTAAGCGATTTGCACCGGAAGAGATCAGTTCCATGGTGT 28673 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAG-TAACTGATGCAGT 474741 | |||| ||||| |||| || ||| | ||||| || |||| | | | | || || Sbjct 28672 TGACCAAGATGAAGGAAACTGCTGAGG-CGTATCTGGG-CAAGTCGGTCAAGAACGCGGT 28615 Query 474742 AATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAG 474801 || || ||||| || || || || ||||||||||| || || || || ||||| ||| Sbjct 28614 CATCACCGTTCCGGCTTACTTCAACGATTCTCAACGCCAGGCCACCAAGGATGCTGGAGC 28555 Query 474802 AATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTA 474861 || || || || || ||| | | |||||||| |||||||| ||||| ||| | || || Sbjct 28554 CATCGCTGGGCTGAACGTTATGAGAATTATTAACGAACCAACGGCAGCGGCATTGGCCTA 28495 Query 474862 TGGTCTTGATAAGAA 474876 || || || ||||| Sbjct 28494 CGGACTGGACAAGAA 28480 >seq3122 Length=1344033 Score = 100 bits (110), Expect = 2e-15 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || ||||||||||| || || ||||| |||||||| ||||| ||||| ||||| Sbjct 595063 ATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCCTT 595004 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAAT 480736 || |||||||| ||| || |||||| ||||||| | | || ||||| || Sbjct 595003 ATCCTGAATCTTGGCTTTAACGTTTTCAATGGTATCAGAGGGCTCGACCTCCAGGGTGAT 594944 Query 480737 AGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || |||||||| ||||| || || Sbjct 594943 GGTCTTGCCAGTCAGAGTCTTCACGAAGATCTG 594911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268043180424308