Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq3125 114 1e-20 >seq3125 Length=1403514 Score = 114 bits (126), Expect = 1e-20 Identities = 182/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 139263 CCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGTGCT 139322 || || | |||||| || |||||| | | | |||||| || || || || || || Sbjct 488771 CCCTCGGGACCATGGTAAATTGCATACATGGCGGCCATATTGGCAAGAAGCGCCTGAGCA 488712 Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382 || |||||||| ||||| |||||||||| ||| || |||||||| ||||||||||| || Sbjct 488711 GTACAGATGTTGCTGGTAGCTTTGTCTCGTCTGATGTGCTGCTCCCTAGTTTGTAGGGCC 488652 Query 139383 AATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGTATC 139442 || | || || | || || ||||| | ||| | |||||||| || ||| Sbjct 488651 AAACGATAAGCGTCCTGACCATCCATGTCCCTCGTAACACCAATCATTCTGCCTGGAATC 488592 Query 139443 TTTCTCTTATAC--TTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCA 139500 |||| | | ||||||| | || ||||| ||||||||||| |||||||| |||| Sbjct 488591 AATCTCGTCAGCTTTTGTCTGCAG--GCGAAGAAGGCAGCATGAGGGCCTCCGTAACCCA 488534 Query 139501 TAGGAATACCAAACCTTTG 139519 || | |||| ||||| Sbjct 488533 ACGGCACGCCAAGTCTTTG 488515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578975449950920