Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3122 91.5 3e-13 >seq3122 Length=1344033 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | || || || |||||||| | || | ||| || || || ||||| Sbjct 596505 ATACCTCCGCGCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCC 596446 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || | || ||||||||||| || | | ||||||||| ||| Sbjct 596445 GACAGGGTACGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGATCTGGA 596386 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || ||||| || || |||| || | ||| ||| ||||| || | || Sbjct 596385 GGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCG 596326 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || ||||| || | || || || || || ||||| Sbjct 596325 ACCTCCAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGAAGATCTGCAT 596276 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| || | || || ||||||||||| | || | ||| || || || ||||| Sbjct 596277 ATACCTCCGCGCAGACGCAGTACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCC 596218 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || || || || || || || || | | ||||||||| ||| Sbjct 596217 GAAAGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGA 596158 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || |||||||| || |||| || | || || ||||| || | ||| Sbjct 596157 GGGATTCCCTCCTTATCTTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCG 596098 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || || ||||| Sbjct 596097 ACCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 596048 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| || | || || ||||||||||| | || | ||| || || || Sbjct 596739 ATTTGCATACCTCCGCGCAGACGCAGTACCAGATGAAGGGTCGACTCCTTCTGGATGTTG 596680 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||| || || || | | ||| || || || || || || || || | | ||||||| Sbjct 596679 TAGTCCGACAAGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGA 596620 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| ||||| || ||||| || || |||| || | || ||| ||||| ||| Sbjct 596619 TCTGGAGGAATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCCGAA 596560 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || | || || || || || || | || || || || || ||||| Sbjct 596559 GGTTCGACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 596504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899618739948720