Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq3122 84.2 3e-11 >seq3122 Length=1344033 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | || || ||||||||||| || ||||| | || ||||| || Sbjct 597416 ATGCAGATCTTCGTCAAGACTTTGACTGGAAAGACCATTACCCTCGAGGTCGAGCCCTCG 597475 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| |||||| || || || || ||||| || || || |||||||| ||| Sbjct 597476 GATACCATTGAAAACGTTAAGGCCAAGATCCAGGATAAGGAGGGAATCCCTCCAGATCAA 597535 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | |||| | || ||||||||||| || ||| | || || || || || || Sbjct 597536 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAAC 597595 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || || ||| |||| |||||| Sbjct 597596 ATCCAGAAGGAGTCGACCCTTCAT 597619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731842990423600