Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3122 100 6e-16 >seq3122 Length=1344033 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||| || | ||||| | || | ||||| |||| ||| || ||| || || || Sbjct 595365 ATACCTCCGCGCAGACGCAGGACCAGATGTAGTGTAGACTCCTTCTGGATGTTGTAGTCC 595306 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| ||||| || |||||||| ||||| || | ||||||||| || Sbjct 595305 GAAAGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGA 595246 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || ||||| || || || || ||||| || | ||| || | || Sbjct 595245 GGGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCGATGGTATCCGAGGGCTCG 595186 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || | || ||||| || ||||| || || || | ||||||||||| Sbjct 595185 ACCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAATATCTGCAT 595136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984440002115850