Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq3166 165 7e-36 >seq3166 Length=2194502 Score = 165 bits (182), Expect = 7e-36 Identities = 168/219 (77%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 34432 TTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATG 34491 |||||||||| || || ||||| || ||||| || || |||||||| |||||||| | Sbjct 588083 TTGTAATCGAATTGAGTCTGCGCTCCGAGCTCACAGCCAAAGTACTTGGTCGGGTAGGTC 588142 Query 34492 GCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCG 34551 || || ||||| | || || | || | ||||||||| | ||||||||||||||| Sbjct 588143 GCGGGGCGTCCGATAGCGCGCGCCACATCTGACATGTTGACTAGAACAGTCTTGATGCCG 588202 Query 34552 TTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCC 34611 || || ||||||||||| |||||| | |||||||| ||||| | ||||||| | || Sbjct 588203 TTACCTTTTCCTTCGACTTTGGCGTTCAGCCGCGGCATCTTGTACCTGTAGAACACATCG 588262 Query 34612 GCCACATTGCGGTTAACGTTCACAGTCCCCATCGTGGCT 34650 | ||| |||||||| ||||| ||||| |||||| || || Sbjct 588263 GTCACGTTGCGGTTCACGTTGACAGTACCCATCTTGCCT 588301 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34203 CGGCGGGTTTTTCAGTATGAAGGTGTTGAGCTTATGCGAGAAGTGTAGCGTGCCGTGATA 34262 |||||||||||| | || || ||||| | ||| || || | |||| ||||| | Sbjct 587785 CGGCGGGTTTTTGATGATAAACGTGTTCACCTTGTGGTTGACCTCGAGCGGACCGTGGAA 587844 Query 34263 ACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATGAGCTCAGT 34322 || || || || |||||||| |||| | |||||||| ||||| | || || || Sbjct 587845 CCCACAGGCCTTACAGCCCTGCGAGATGGTTCCCTTTTTAGACGACACCACCAGGTCCGT 587904 Query 34323 CTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCAAGCAGGTC 34382 || || || || || |||||||||| |||||||||||||||||| || || | ||| || Sbjct 587905 TTCGGGATTATCGCACTCCGGACACAGCACAAACTTGCGGATGAACCCGTCCAACAGATC 587964 Query 34383 CTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTT 34430 ||| | ||| | |||||| ||||||||||||||||| |||||||| Sbjct 587965 CTGCAGCTTGTTCGCGTCGTGCGAGCCGTTGACGATGAAACGTTCGTT 588012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412825645091303