Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3133 113 3e-20 seq2724 107 1e-18 seq3122 95.1 9e-15 >seq3133 Length=1421877 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||||||||| ||| || ||||| || || || ||||| || |||| || |||||| | Sbjct 291908 CGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCA 291849 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | |||| | ||||||||||| || || ||||| ||| Sbjct 291848 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTTG 291789 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || |||||| | || | || || || | || || || ||||| || Sbjct 291788 TCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGGACGGCTCGACCTCGAGAGTGATG 291729 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| || || |||||||| Sbjct 291728 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 291694 >seq2724 Length=367895 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||||||||||| |||||| || ||||| || || ||||| ||||||| | Sbjct 202353 CCACCACGCAGACGCAGCACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAA 202412 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| || |||||||| || || || | || | | |||||||| || || Sbjct 202413 AGAGTACGACCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 202472 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || || || | || | || || ||| | || || Sbjct 202473 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCGACC 202532 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || |||||||| | || || || || |||||||| Sbjct 202533 TCCAGAGTGATGGTCTTGCCAGTCAGTGTCTTCACGAAGATCTGCAT 202579 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 |||||| | | |||||||||||| ||||| || || || || || ||||| ||||||| Sbjct 202808 TCCTCCGCGGAGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGA 202867 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | ||| ||| || || | || || || || | |||| | ||||| || || || Sbjct 202868 CAAGGTACGACCGTCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 202927 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 ||| ||||| |||||||| | || ||||| | || | ||||| || | || || Sbjct 202928 AATTCCCTCCTTGTCTTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGAC 202987 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | ||| || || ||||| || | ||| || || || |||||||| Sbjct 202988 CTCCAAAGTAATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 203035 >seq3122 Length=1344033 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| | || |||||| |||| ||| || || || || || || ||||| || |||| | Sbjct 595362 CCTCCGCGCAGACGCAGGACCAGATGTAGTGTAGACTCCTTCTGGATGTTGTAGTCCGAA 595303 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || | || || ||||| | ||||| | || ||||| || || Sbjct 595302 AGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGAGGG 595243 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | || || ||| | || | || || || | || || Sbjct 595242 ATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCGATGGTATCCGAGGGCTCGACC 595183 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || |||||||| || || || || ||||||||||| Sbjct 595182 TCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAATATCTGCAT 595136 Score = 86.0 bits (94), Expect = 5e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 29557 TGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCC 29616 || ||||||||||| |||| |||||||| || ||| || || || ||||| |||||| Sbjct 598101 TGACCTCCCCTCAATCGCAATACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAATCC 598042 Query 29617 GCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGC 29676 | | ||| ||| ||| || || || || ||||| | |||| | || ||||| || Sbjct 598041 GACAGGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGG 597982 Query 29677 GGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 || || ||||| || || || ||| || | || || | || | || || || | || Sbjct 597981 GGGATTCCCTCCTTATCCTG-AATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTC 597923 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | || || || || || |||| || || || || |||||||| Sbjct 597922 GACCTCCAAGGTGATGGTCTTTCCCGTTAGAGTCTTGACGAAGATCTGCAT 597872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385204312602111