Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq3122 183 6e-41 >seq3122 Length=1344033 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || ||||||||| || || ||||| || || ||||| ||||| || || | Sbjct 597416 TACCTCCGCGCAGACGCAGAACCAAATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTG 597357 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| || || | || || ||||| ||||| || | ||||||||||| | Sbjct 597356 AAAGAGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGGG 597297 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||||||||| |||||||| || || |||||||| ||||| ||||| | Sbjct 597296 GGATTCCCTCCTTATCTTGGATCTTTGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGA 597237 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || |||||||| ||||| ||||| || || |||||||| Sbjct 597236 CCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 597188 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || ||||||||| | || || ||||| || ||||| || || || || | Sbjct 597188 TACCTCCGCGCAGACGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 597129 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || || || || ||||| ||||| || | ||||||||||| | Sbjct 597128 ACAAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGGG 597069 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||||||||| ||||| || || || |||||||| ||||| ||||| | Sbjct 597068 GGATTCCCTCCTTATCTTGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGA 597009 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || |||||||| |||| ||||| || || |||||||| Sbjct 597008 CCTCCAGAGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 596960 Score = 161 bits (178), Expect = 2e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || | || || ||||| || ||||| || || || || | Sbjct 597872 TACCTCCGCGCAGACGCAGGACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 597813 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | |||||| || || || || ||||| ||||| || | ||||||||||||| Sbjct 597812 ACAAGGTACGACCGTCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAG 597753 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| || || || || || || |||||||| ||||| ||||| | Sbjct 597752 GGATTCCCTCCTTATCCTGGATTTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGA 597693 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || |||||||| ||||| ||||| || || |||||||| Sbjct 597692 CCTCCAGAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCAT 597644 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || |||||| || || ||||| || || ||||| || || || || | Sbjct 595136 TACCACCGCGCAGACGCAGTACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCCG 595077 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || || || |||||||| ||||| || | ||||||||||||| Sbjct 595076 ACAAGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGAG 595017 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| |||||||| ||||| || |||||||| |||||| || || | Sbjct 595016 GGATTCCCTCCTTATCCTGAATCTTGGCTTTAACGTTTTCAATGGTATCAGAGGGCTCGA 594957 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 594956 CCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 594908 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || || || ||||| || || ||||| || || || || | Sbjct 596048 TACCTCCGCGCAGACGCAGGACCAAATGTAGAGTGGACTCCTTCTGGATGTTGTAGTCCG 595989 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || || || || ||||| ||||| || | ||||||||||||| Sbjct 595988 ACAAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAG 595929 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| |||||||| || || || || || || ||||| |||||| | Sbjct 595928 GGATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCCGAAGGTTCGA 595869 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 595868 CCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 595820 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||||| | || || || || || ||||| || || || || | Sbjct 596504 TACCTCCGCGCAGGCGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 596445 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || || || ||||| |||||||| || | ||||||||||||| Sbjct 596444 ACAGGGTACGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGATCTGGAG 596385 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| || ||||| || || || |||||||| ||||| ||||| | Sbjct 596384 GGATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGA 596325 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || ||||| ||||| || || |||||||| Sbjct 596324 CCTCCAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGAAGATCTGCAT 596276 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || | || || ||||| || ||||| || || || || | Sbjct 595364 TACCTCCGCGCAGACGCAGGACCAGATGTAGTGTAGACTCCTTCTGGATGTTGTAGTCCG 595305 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || | || || ||||| ||||| | | ||||||||||||| Sbjct 595304 AAAGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGAG 595245 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| || ||||| || || ||||| || || ||||| || || | Sbjct 595244 GGATTCCCTCCTTATCCTGGATCTTGGCCTTAACATTCTCGATGGTATCCGAGGGCTCGA 595185 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| ||||| ||||| || ||||||||||| Sbjct 595184 CCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTGACGAATATCTGCAT 595136 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || | || || || || || ||||| || || || || | Sbjct 596732 TACCTCCGCGCAGACGCAGTACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 596673 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || | || || ||||| ||||| || | ||||||||||||| Sbjct 596672 ACAAGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAG 596613 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| || ||||| || || || || ||||| ||||| |||||| | Sbjct 596612 GAATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTCTCAATGGTATCCGAAGGTTCGA 596553 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||| ||||| ||||| || || |||||||| Sbjct 596552 CCTCCAAGGTGATGGTCTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 596504 Score = 152 bits (168), Expect = 1e-31 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || ||||||||| | || || ||||| || ||||| || || || || | Sbjct 596960 TACCTCCGCGCAGACGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCG 596901 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || || || || ||||| ||||| || | ||||||||||||| Sbjct 596900 ACAAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAG 596841 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| || ||||| || || || |||||||| ||||| ||||| | Sbjct 596840 GGATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGA 596781 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || ||||| ||||| || || || ||||| Sbjct 596780 CCTCCAGGGTGATGGTCTTACCAGTCAAAGTCTTGACGAAGATTTGCAT 596732 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || | || || || || || ||||| || || || || | Sbjct 595820 TACCTCCGCGCAGACGCAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 595761 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | ||| || || | || || ||||| ||||| || | ||||||||||| | Sbjct 595760 ATAAGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGGG 595701 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| |||||||| || || || |||||||| ||||| ||||| | Sbjct 595700 GAATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGA 595641 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 595640 CCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 595592 Score = 141 bits (156), Expect = 2e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 |||||| ||||| |||| || || ||||| || || ||||| || || ||||| || Sbjct 598099 ACCTCCCCTCAATCGCAATACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAATCCGA 598040 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | ||| || || || || |||||||| ||||| || | ||||||||||| || Sbjct 598039 CAGGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGGGG 597980 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| |||||||| |||||||| || || || || || || ||||| || || || Sbjct 597979 GATTCCCTCCTTATCCTGAATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGAC 597920 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | ||||| || || |||||||| Sbjct 597919 CTCCAAGGTGATGGTCTTTCCCGTTAGAGTCTTGACGAAGATCTGCAT 597872 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || | || || || || || || || || || || || | Sbjct 596276 TACCTCCGCGCAGACGCAGTACCAGATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCCG 596217 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | ||| || || | || || ||||| ||||| || | ||||||||||||| Sbjct 596216 AAAGGGTACGACCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAG 596157 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||||||||| ||||| || || || || || || ||||| || || | Sbjct 596156 GGATTCCCTCCTTATCTTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGA 596097 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| |||| ||||| || || |||||||| Sbjct 596096 CCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 596048 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | | |||||| || | || || || || || ||||| || || || || | Sbjct 597644 TACCTCCGCGTAGACGCAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 597585 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || || || || ||||| ||||| || | ||||||||||||| Sbjct 597584 ACAAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAG 597525 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| |||||||| || ||||| || || || |||||||| ||||| || || | Sbjct 597524 GGATTCCCTCCTTATCCTGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGCTCGA 597465 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || ||||| ||||| || || |||||||| Sbjct 597464 CCTCGAGGGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 597416 Score = 129 bits (142), Expect = 1e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| | || |||||| || | || || || || || ||||| || || || || | Sbjct 595592 TACCTCCGCGCAGACGCAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 595533 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| || || || || || ||||| || || || | ||||||||||| | Sbjct 595532 ACAAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAAATCAGACGCTGTTGATCTGGGG 595473 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||||||||| ||||| || || || || || || ||||| || || | Sbjct 595472 GAATTCCCTCCTTATCTTGGATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGA 595413 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || ||||| ||||| || || |||||||| Sbjct 595412 CCTCCAGGGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 595364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981787309894969