Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq3140 114 8e-21 seq2724 102 5e-17 seq3122 96.9 2e-15 >seq3140 Length=1521851 Score = 114 bits (126), Expect = 8e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||||| || || ||| ||| || || |||||||| ||||| Sbjct 429096 ACCACCGCGCAGACGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGA 429155 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| |||| |||| || || ||||| || |||||||||||||||||| |||| Sbjct 429156 CAGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGG 429215 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || | || |||| || | ||||| || || | Sbjct 429216 GATTCCCTCCTTGTCCTGGATCTT-GGCTTTGACATTCTCGATCGTGTCCGATGGCTCGA 429274 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 | |||| ||||| || || || || | || || || ||||||||||| || Sbjct 429275 CCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGT 429326 >seq2724 Length=367895 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| ||| || || ||| || || ||||||||||| || Sbjct 203037 CCACCACGCAGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAA 203096 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || |||||||| ||||||| ||||||||| ||| |||| Sbjct 203097 AGGGTGCGGCCGTCCTCCAACTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGCGGG 203156 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | |||| || | |||||| | || || Sbjct 203157 ATTCCCTCCTTGTCCTGGATCTT-AGCCTTGACATTCTCGATGGTGTCCGACGGCTCGAC 203215 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || ||||| || || || || || ||||| ||||| Sbjct 203216 CTCGAGGGTGATGGTCTTACCGGTCAAAGTCTTGACGAAGATTTGCAT 203263 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| ||| || || ||| || || ||||||||||| || || ||||| |||| ||| Sbjct 202143 ACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGGCCGTCCTCC 202202 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 || || |||||||| || || | ||||||||||||| | || | || || ||||| Sbjct 202203 AACTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 202262 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || | | |||| || | |||||| | || || || | ||||| || || Sbjct 202263 ATCTT-GGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGTGATGGTCTT 202321 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || || ||||||||||| Sbjct 202322 ACCGGTCAGGGTCTTCACGAAGATCTGCAT 202351 >seq3122 Length=1344033 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| || ||||| || || |||||||| || |||||||| || || ||||||||||| || Sbjct 598099 ACCTCCCCTCAATCGCAATACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAATCCGA 598040 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || || | || |||| || ||||| || || |||| |||||| |||||| | || Sbjct 598039 CAGGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGGGG 597980 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || || || ||| || | | ||| | || | ||| || | || | Sbjct 597979 GATTCCCTCCTTATCCTGAATCTT-GGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGA 597921 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || |||| || || || |||||||||||| Sbjct 597920 CCTCCAAGGTGATGGTCTTTCCCGTTAGAGTCTTGACGAAGATCTGCATA 597871 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||||| || |||||||| || || |||||||| || || Sbjct 595135 ACCACCGCGCAGACGCAGTACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCCGA 595076 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || |||| || ||||| || || |||| |||||| |||||| | || Sbjct 595075 CAAGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGAGG 595016 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | || || || || ||| || ||| ||| | ||| ||| || | || | Sbjct 595015 GATTCCCTCCTTATCCTGAATCTTGGCTTT-AACGTTTTCAATGGTATCAGAGGGCTCGA 594957 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 | || | ||||| || || || || | || || || ||||||||||| |||| Sbjct 594956 CCTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATCGTTG 594903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328691296720320