Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2724 107 5e-18 seq3122 87.8 4e-12 >seq2724 Length=367895 Score = 107 bits (118), Expect = 5e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || || |||||||| || || || ||||| |||| Sbjct 203020 AAGACCCTGACCGGCAAGACCATTACTTTGGAGGTCGAGCCCTCGGACACCATCGAGAAC 202961 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || || |||||| || ||| || | || |||||| Sbjct 202960 GTCAAGGCTAAGATCCAAGACAAGGAGGGAATTCCCCCAGACCAGCAGCGTCTGATCTTC 202901 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||||||||||||||| || || | || ||| | ||||||||| ||||||| ||||| Sbjct 202900 GCCGGAAAGCAGTTGGAGGACGGTCGTACCTTGTCGGATTACAACATCCAGAAGGAGTCG 202841 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 202840 ACCCTTCAC 202832 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || |||||| |||| || || || ||||| |||| Sbjct 202792 AAAACCCTGACCGGCAAGACCATCACTCTGGAGGTCGAGCCCTCGGACACCATCGAGAAT 202733 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || | || |||||| Sbjct 202732 GTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCAGACCAGCAGCGTCTGATCTTC 202673 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | |||||||| | ||| || |||| ||||| ||||||| |||||| Sbjct 202672 GCCGGAAAGCAGCTTGAAGATGGTCGTACTCTGTCCGACTACAATATCCAGAAGGAGTCT 202613 Query 206365 ACTCTTCACCTTGT 206378 || || || || || Sbjct 202612 ACGCTCCATCTGGT 202599 Score = 89.7 bits (98), Expect = 1e-12 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || || ||| |||| || ||| || || || |||| Sbjct 202108 AAGACGCTGACCGGTAAGACCATTACTCTGGAGGTCGAACCGTCCGATACGATCGAGAAT 202049 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || || || | ||||||||| Sbjct 202048 GTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATCAGCAGCGTCTTATCTTC 201989 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || ||||| | || ||| | ||||||||| ||||||| || || Sbjct 201988 GCCGGAAAGCAGCTCGAGGATGGTCGTACCTTGTCGGATTACAACATCCAGAAGGAATCG 201929 Query 206365 ACTCTTCAC 206373 || |||||| Sbjct 201928 ACCCTTCAC 201920 Score = 86.0 bits (94), Expect = 1e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || || || || |||||||| ||||||| ||| ||||| | || ||| | |||||||| Sbjct 202599 ACCAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGACCATCTTCA 202658 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||||||||||||||| || || || || Sbjct 202659 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTG 202690 >seq3122 Length=1344033 Score = 87.8 bits (96), Expect = 4e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || || || ||||| |||| || ||| || || Sbjct 595595 CAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTCGAACCCTCGGAT 595654 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | ||| || ||| |||||||| || || || |||||| || || || Sbjct 595655 ACCATTGAAAACGTTAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAACAG 595714 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || |||||||| || ||||||||||| ||||| | || || | || |||||| || Sbjct 595715 CGTCTGATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGTACCTTATCGGACTACAACATC 595774 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || ||||| || || Sbjct 595775 CAGAAGGAGTCGACCCTTCATCTGGT 595800 Score = 86.0 bits (94), Expect = 1e-11 Identities = 130/185 (70%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || || || ||||| ||||| || ||| ||| || || | || || ||| Sbjct 596528 ACTGGCAAGACCATCACCTTGGAGGTCGAACCTTCGGATACCATTGAGAACGTTAAGGCC 596587 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||| || || || || |||||| || || || | || |||||||| || ||| Sbjct 596588 AAGATCCAGGATAAGGAGGGAATTCCTCCAGATCAACAGCGTCTGATCTTCGCTGGTAAG 596647 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 |||||||| ||||| | || ||| | || |||||| ||||||| ||||| || ||||| Sbjct 596648 CAGTTGGAGGATGGTCGTACCTTGTCGGACTACAACATCCAGAAGGAGTCGACCCTTCAT 596707 Query 206374 CTTGT 206378 || || Sbjct 596708 CTGGT 596712 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || ||| || ||||| |||||||| ||||||| || ||||| | ||| || Sbjct 596952 CGCAGACGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAAGGTA 596893 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| ||||||||||| || |||||||| || || |||||| Sbjct 596892 CGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGA 596848 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 || || | || ||| || ||||| |||||||| ||||||| || ||||| | ||| || Sbjct 597180 CGCAGACGCAGAACCAGATGAAGGGTAGACTCCTTCTGGATGTTGTAGTCCGACAAGGTA 597121 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | ||||| ||||||||||| || |||||||| || || |||||| Sbjct 597120 CGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGA 597076 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181772784467491