Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2742 107 3e-18 seq1919 105 1e-17 >seq2742 Length=387167 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 161354 GAGACACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAA 161413 ||||| || ||||| |||| ||| || |||||||| || || || || | || ||| Sbjct 149331 GAGACGCCGCAGAACGAAAAAACTCCGTTCTACCCGCGGTCACCGTACGCTTGCGCCAAA 149390 Query 161414 CTCTATGGATATTGGATTGTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGT 161473 || || || || ||||| | | |||||| | ||| || |||||| |||| | | | Sbjct 149391 CTGTACGGCTACTGGATCCTCATCAACTACCGTGAGGCGTACGGGATGTTCGCCTGCAAT 149450 Query 161474 GGTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATT 161533 || || || ||||||||||| ||||| ||||| || || | ||||| ||||||||||| Sbjct 149451 GGGATCCTGTTCAACCATGAATCACCGCGACGCGGAGAAAACTTCGTGACCCGTAAGATC 149510 Query 161534 AC 161535 || Sbjct 149511 AC 149512 >seq1919 Length=123048 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 161313 TCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGACACCACAGAAAGAAA 161372 |||||||||| ||| || |||| ||| ||| ||||| || ||||| |||| Sbjct 38823 TCTACCAGGCCAGCACGTCGGAACTGTACGGGAAGGTCGTCGAGACGCCGCAGAACGAAA 38764 Query 161373 CAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCTATGGATATTGGATTG 161432 ||| || |||||||| || || || || | || ||||| || || || ||||| Sbjct 38763 AAACTCCGTTCTACCCGCGGTCACCGTACGCTTGCGCCAAACTGTACGGCTACTGGATCC 38704 Query 161433 TAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTGGTATTCTATTCAACCATG 161492 | | |||||| | ||| || |||||| ||| | | ||| || || |||||||||| Sbjct 38703 TCATCAACTACCGTGAGGCGTACGGGATGTTCGCGTGCAATGGGATCCTGTTCAACCATG 38644 Query 161493 AGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTAC 161535 | ||||| |||||||| || | ||||| ||||| ||||| || Sbjct 38643 AATCACCGCGACGGGGGGAAAACTTCGTGACCCGCAAGATCAC 38601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729900667415480