Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq3071 275 9e-69 >seq3071 Length=929925 Score = 275 bits (304), Expect = 9e-69 Identities = 1204/1886 (64%), Gaps = 32/1886 (2%) Strand=Plus/Plus Query 68363 CCTTATCCAATGTAAACTGAATGGG--TGAGGATGCGGGTTTTGTACGTAGATAGTACAT 68420 |||| |||| || ||||| |||| ||| | |||||||| || || || |||||||| Sbjct 832866 CCTTGTCCACGGTGAACTGGATGGCGTTGACG--GCGGGTTTGGTGCGCAGGTAGTACAT 832923 Query 68421 ACCGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACT 68480 |||||||| || || | |||| |||||||| || || || |||||| || | Sbjct 832924 TCCGGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTT 832983 Query 68481 TGGATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGC 68540 || || || | || || || | ||| || || |||||||| || || | || || Sbjct 832984 GGGTTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGTCGGC 833043 Query 68541 CGCCATTTTTATAATACTCTTTTGA-GGA-ATTTCCCAAATAGTCTTAAAAATCTGTTTG 68598 |||||||| || | ||||| ||| |||||||| | || || | | || | Sbjct 833044 GGCCATTTTGATGCAGGT--TTTGACGGAGATTTCCCACACCGTTTTGTAGAGCTCGCGG 833101 Query 68599 ATAT-CATCTGGAAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTC 68655 || | | | ||| | ||| | | || ||||| || || || ||| | ||| Sbjct 833102 ATGTGCTTGGGGATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTC 833161 Query 68656 TTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACT 68715 || || || || | ||||| | || || | || | |||||||| | || || Sbjct 833162 TTCATGTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACG 833221 Query 68716 ATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 68775 | || || || || || | ||| | || |||| | || ||| || ||||| | Sbjct 833222 ACCTGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAG 833281 Query 68776 GATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAA 68835 ||||| || || || || ||||| || || || || |||||||| || || | | | Sbjct 833282 GATTCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGG 833341 Query 68836 CTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCA 68895 |||| | || || | |||||| || || || | ||| ||||| || || Sbjct 833342 GAGTTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCG 833401 Query 68896 GATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTA 68955 ||||| | ||||| | ||||| || || || || || || | | |||| Sbjct 833402 GATGGGGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGACAGCCATCG 833461 Query 68956 TATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAA 69015 || ||||| || | ||| |||| || || | |||||| |||||||| | |||||||| Sbjct 833462 TACGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTTGCCTCGAGGGCACCGTAG 833521 Query 69016 TAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAA 69075 || || |||||||| || | || || || | ||| ||||| || ||| | || | Sbjct 833522 TAGATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCCTCGCTCTCGTACGGGAAG 833581 Query 69076 TGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTC 69135 | | || || || || || |||| |||||| || || || ||||| || | || | | Sbjct 833582 CGCATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGACGC 833641 Query 69136 TTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGA 69195 | || || | | || || |||| || || || || || || |||||||| || ||| Sbjct 833642 ATGTTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGA 833701 Query 69196 TTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----TCGTCCATC 69251 ||| |||| |||| || ||||| || || | || ||| | | |||| Sbjct 833702 TTTTTTGTGACTATTTTAGAGACTTCCTTGAGCTTCTGGAAGTCATACGACTTGTCCGGT 833761 Query 69252 TATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTA---CCTCATTAGA 69308 | | |||||||| || | || | || || | || || || || | | || || || Sbjct 833762 T-TGACAAACATGTTGACCGCGATCGAGGCCAAGTTGCACACGGCAATTTCGTCCTTGGA 833820 Query 69309 ATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTG 69368 | || | | || || || || || || ||| || || || || | || || Sbjct 833821 C---GAGTACTCCACGATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTG 833877 Query 69369 CTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAAT 69428 ||| || ||||| ||| || ||||||||||| || || |||| || || || | Sbjct 833878 CTGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGAC 833937 Query 69429 CTGAGATTCGATAATAGATTTCCAAACGACCCT-AGCATTTA--TTACGGTCTTGTAACG 69485 ||| || ||||| || | ||| | || ||| ||| || | ||||| |||| || Sbjct 833938 CTGCGACTCGATGATCGCGAACCACA-GATCCTGAGCCTTGACCTTACGAA--TGTAGCG 833994 Query 69486 CTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAA 69545 || || || || || || ||| ||||| || || |||||| || | Sbjct 833995 TCCTTCGTTCTCGTACGTCGTGTACAGCTTCTCGAACTCCTCACCCCAAGTTTCCGGGAG 834054 Query 69546 TCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCAT 69605 ||| ||||| || | || ||||||| |||| | || | | ||| ||||| ||||| Sbjct 834055 TCCGGGACAGTCGTGCGGGCACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCAT 834114 Query 69606 AAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCC 69665 || ||||| |||||||| || || || | || | | | || || || || Sbjct 834115 GAACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCC 834174 Query 69666 TGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATAT 69725 || ||||| || | || | |||||| | ||||| ||||| ||||| ||||| || Sbjct 834175 GGTGTTTTTCTTCAAGTCCAAAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGAT 834234 Query 69726 CGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATA 69785 ||| | | || || || || || || ||||| || | ||| | || ||||| || || Sbjct 834235 CGCAAACGCCCCGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTA 834294 Query 69786 GACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCC 69845 || ||||||||||| | | || || || | || || ||||| | ||| || | || Sbjct 834295 AACCCTCAGCATCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGCC 834354 Query 69846 TCTTGCGCGAAT--ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGA 69903 | || || || | | | | | | ||| ||||| || ||| || ||||| | Sbjct 834355 CTTCGCCCGGATGCAGTGC--ACATTCACACCGATTCCACCCGCCGACTTGGAGATCAAC 834412 Query 69904 GCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGA 69963 || || | |||| ||||| || || || || || ||||| || |||| | | || Sbjct 834413 GCGCACTGCTTCAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGG 834472 Query 69964 AAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGA 70023 || || |||| || || | || |||| ||| | || || || ||||| Sbjct 834473 AAGCACGACGACAGCTGCGGACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGC 834532 Query 70024 GTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACTGA 70083 || || | || || ||||| ||||| || ||||| || | || || ||| | Sbjct 834533 GTAAAGTACCGCTCCGACAGCAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCCG 834592 Query 70084 TGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTT 70143 ||||| || | ||| || ||||||| ||| ||||| || || || ||| || || Sbjct 834593 TGAATGCCAACCGCCACCCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTTG 834652 Query 70144 ATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCT 70203 || |||| |||||| || ||||| || || || ||||| |||||||| |||||| Sbjct 834653 ATCTTCAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTCC 834712 Query 70204 CTTTCGTAAATAATAACAGAATTTAG 70229 | ||||| || || | ||||| || Sbjct 834713 CGGTCGTAGATGATGGCCGAATTAAG 834738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686881572652440