Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq1919 98.7 1e-15 >seq1919 Length=123048 Score = 98.7 bits (108), Expect = 1e-15 Identities = 187/272 (69%), Gaps = 4/272 (1%) Strand=Plus/Minus Query 9273 TGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATCCTCTTC 9332 ||| || ||| || ||||| ||| | ||||| |||| |||||| || ||||| ||| Sbjct 38710 TGGATCCTCATCAACTACCGTGAGGCGTACGGGATGTTCGCGTGCAATGGGATCCTGTTC 38651 Query 9333 AACCATGAATCACCGAGACGAGGTGCAGACTTTGTGACCATGAAGATTAC-CG-AGGGTA 9390 ||||||||||||||| |||| || | | |||| |||||| ||||| || || ||| Sbjct 38650 AACCATGAATCACCGCGACGGGGGGAAAACTTCGTGACCCGCAAGATCACACGCTCGGTG 38591 Query 9391 TCAAACAAATCATGAAGGGTGAAAAGGAGTTCATTGAATTGGGTAACATAAACGCGGAGA 9450 | | ||||| | ||| | | | | | || |||| ||| | || | || Sbjct 38590 GCGA--AAATCTTCCTCGGTCAGCTGACCTGCCTGGAGCTGGGCAACCTCGACTCCAAGC 38533 Query 9451 GAGATTGGGGTCACGCGAAGGACTATGTTGAAGCTATGTGGCTCATGCTTCAACAAGAGG 9510 | || ||||| ||||| |||||| || ||||| |||||||| ||||| || || || | Sbjct 38532 GTGACTGGGGCCACGCCCGGGACTACGTCGAAGCGATGTGGCTGATGCTGCAGCAGGACG 38473 Query 9511 AAGCCGACGAATATGTAGTAGCAACGGGTGAG 9542 || | | || || || || || || || ||| Sbjct 38472 AACCGCAGGATTACGTGGTGGCCACCGGGGAG 38441 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628007106381600