Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3071 165 1e-35 seq3141 136 5e-27 >seq3071 Length=929925 Score = 165 bits (182), Expect = 1e-35 Identities = 639/994 (64%), Gaps = 19/994 (2%) Strand=Plus/Plus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 |||| |||| ||||| || || ||| | || ||||| || | |||||| || ||||| Sbjct 833255 TAGACGTTGGAGGTGTACGGTTCGAAGGATTCGTTGTTGCCGAGGATTTGCGCGGTGGAC 833314 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || || ||||| || || | ||||||| ||| |||| || | | || |||| Sbjct 833315 GCGGTTGGCATTGGGGCGAGGAGAAGGGAGTTTCGGACTCCGTGCTTGGCGATTTTTTCC 833374 Query 118302 TTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGG 118361 ||||| | | ||||||| | | || || | |||||| || |||| ||| Sbjct 833375 TTGAGTGGGGCCCAGTCCCACAGGTCGGATGGGGCCTTGTTCCACATGTCGTACTGCAGG 833434 Query 118362 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 118421 || || | | | || | || || | || || || | || || ||| || | | Sbjct 833435 ATGCCCTTGCTAACCGGACAGCCATCGTACGTTTCGTAGGTTCCGTCCTTCTCGGCAATT 833494 Query 118422 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCC 118481 || |||| ||||||||||| ||| || || ||||| || || | |||| || Sbjct 833495 TCACAGCTTGCCTCGAGGGCACCGTAGTAGATGGTTTCGAAGATTTGCTGGTTCA--GCT 833552 Query 118482 TT--GGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 118539 || ||| || ||| || ||| || || || || || | || || | || | Sbjct 833553 TTTGGGCTTCCTCGCTCTCGTACGGGAAGCGCATCAGGATGAACGCGTCGGCCATTCCCT 833612 Query 118540 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC---ACGG 118596 ||||||||| || || ||||| || | ||| || || || || |||| || | Sbjct 833613 GGACACCGATTCCGATCGGGCGGTGACGCATGTTGGAG---CGCTTGGCCTCCGGAACTG 833669 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 | || | || | ||||||| | || |||||||| ||||| | || | || ||| | Sbjct 833670 GGTAGTAGTTGATGTCGATAATTTTGTTCAGATTTTTTGTGACTATTTTAGAGACTTCCT 833729 Query 118657 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTG 118716 ||||| | | | ||| | | | ||| | |||||| || | | ||||| | Sbjct 833730 TGAGCTTCTGGAAGTCATA-CGACTTGTCCGGT--TTGACAAACATGTTGACCGCGATCG 833786 Query 118717 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACA 118776 | |||| || ||||| | | || ||||| | |||||| | ||||||||||| | Sbjct 833787 AGGCCAAGTTGCACACGGCAATTTCGTCCTTGGACGAGTACTCCACGATTTCCGTGCAAA 833846 Query 118777 AGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 118836 ||| |||| ||| |||||||| | ||||| || || ||| ||| || || |||| Sbjct 833847 GGTTCGAACACTTTATGGTGCCGATGTTCTGCTGGTTGCTCTTCCGGTTGCAAGCGTCCT 833906 Query 118837 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT 118896 |||| |||||||| ||| |||||||| || |||| || || || ||| | || Sbjct 833907 TGTACAGCATGTACGGCACTCCCGTCTCGACCTGCGACTCGATGATCGCGAACCACAGAT 833966 Query 118897 CGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956 | ||| || | || || || || | ||||||| | ||||| || | Sbjct 833967 CCTGAGCCTTGACCTTACGAATGTAGCGTCCTTCGTTCTCGTACGTCGTGTACAGCTTCT 834026 Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016 | ||||| |||||| | || | ||| || || | | ||||| | ||| ||| Sbjct 834027 CGAACTCCTCACCCCAAGTTTCCGGGAGTCCGGGACAGTCGTGCGGGCACATCAGACACC 834086 Query 119017 ATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAA 119074 | | || | | |||| || ||||||||||| || || || ||||| ||||| |||| Sbjct 834087 A--GTCCTCGTTAGCCTCGACTCGCTTCATGAACAGATCCGGAATCCACAGCGCGTAGAA 834144 Query 119075 GAGATCCCGACAGC-GAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCA 119133 | |||||| || || || || | | || || || ||| |||||||| || | Sbjct 834145 CATGTCCCGAGCGCGGACCTCCTCCTTGCCGGTG-TTTTTCTTCAAGTCCAAAAACTCAA 834203 Query 119134 TGATATCCGCGTGCCACGGTTCCAGGTACACCGC 119167 |||||| |||||||||||||||| || | ||| Sbjct 834204 AGATATCTCCGTGCCACGGTTCCAGATAGATCGC 834237 >seq3141 Length=1574671 Score = 136 bits (150), Expect = 5e-27 Identities = 345/522 (66%), Gaps = 2/522 (0%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| ||||||||||||||| ||||| || || | ||| |||||| Sbjct 1346007 TACTCGCCGACCTTCTTCTCGAAGAAGTTCGTCTTTCCCTCGAGCGAGATGAACTCCATG 1345948 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 || || |||||||| | ||| | || | || | || ||||| ||| Sbjct 1345947 AAGCTGAACGGGTTCTTGGTGTTGTAGATCTTTTCGTTGCCCAGCTCGAGCAGGAGGCGA 1345888 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 |||| ||| |||| ||||||| |||||| |||| ||||||| |||| |||| Sbjct 1345887 TCCGCGACAAACTCGATGTACTGCGACATCAGCTCGCAGTTCATGCCGAGCAGGTCGACG 1345828 Query 129908 GGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTGA 129967 || || || | | || |||| ||| ||| ||| | || ||||| || | ||| || | Sbjct 1345827 GGCAGGGCTTTCGTGAGGAACTCCTGCTCGATGACGACGGCTTCGCGGATGATTTCGAGC 1345768 Query 129968 ATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCAC-GGCAAACTCCTG 130026 | | || || ||| || || | | || | | | || |||||| || Sbjct 1345767 ACGCGTTCTTTGG-AGGGCTTCTGGACCAGGTAGCGGAACATGAGACAGGCAAAGTCGGT 1345709 Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| || ||||| || || ||||||||| ||| || |||||||| || Sbjct 1345708 GTGGAGTCCCTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTCAGGCCGGGCATGAGGCC 1345649 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || | || ||| ||||||||| ||||| || Sbjct 1345648 ACGCTTCTTGAGCCAGAAGATGGACGCGAAGCTGCCGCTGAAGAAGATGCCCTCGACGGC 1345589 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGC 130206 ||||| || | | ||||| ||||| | | ||| | | ||| |||||||| Sbjct 1345588 GGCGAAAGCGACCACGCGCTCGCCAAAGTTGGCGTGCTTGCTCGAGATCCAGTTCATCGC 1345529 Query 130207 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 130248 ||| | |||||||||| | ||| || | |||| |||||| Sbjct 1345528 CCAGTCAGCCTTTTTCTTCACACAGGGCAGCGTCTCGATCGC 1345487 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618410686774760