Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3071 168 8e-37 seq3141 96.9 4e-15 >seq3071 Length=929925 Score = 168 bits (186), Expect = 8e-37 Identities = 641/993 (65%), Gaps = 25/993 (3%) Strand=Plus/Minus Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 ||||||| || || ||||||| |||||| | ||||| | || ||| ||| | Sbjct 834233 TCTATCTGGAACCGTGGCACGGAGATATCTTTGAGTTTTTGGACTTGAAGAAAAACACCG 834174 Query 104676 GTGACGAGGAGG--CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTT 104733 | | ||||||| |||| | || || | |||| ||| || |||||||| ||||| || Sbjct 834173 GCAAGGAGGAGGTCCGCGCT--CGGGACATGTTCTACGCGCTGTGGATTCCGGATCTGTT 834116 Query 104734 CATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGG 104793 ||||||| |||| |||| | | | |||| ||| | || || || | || || Sbjct 834115 CATGAAGCGAGTCGAGGCTAACGAGGACTGGTGTCTGATGTGCCCGCACGACTGTCCCGG 834056 Query 104794 TCTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGG 104853 ||| | || | |||||||||||| || || ||||| | ||||||| | ||||| Sbjct 834055 ACTCCCGGAAACTTGGGGTGAGGAGTTCGAGAAGCTGTACACGACGTACGAGAACGAAGG 833996 Query 104854 TCGGGCGAC-TGCG-ACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAA 104911 | || || | || | ||| ||| ||| ||||| || || || |||| || Sbjct 833995 AC--GCTACATTCGTAAGGTCAAGGCTCAGGATCTGTGGTTCGCGATCATCGAGTCGCAG 833938 Query 104912 ACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAA 104971 |||||| || || |||||||| ||||| ||||| || |||| ||||| || || Sbjct 833937 GTCGAGACGGGAGTGCCGTACATGCTGTACAAGGACGCTTGCAACCGGAAGAGCAACCAG 833878 Query 104972 AAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGAC 105031 |||| | || || ||| |||| || || || || |||||| |||| | | | Sbjct 833877 CAGAACATCGGCACCATAAAGTGTTCGAACCTTTGCACGGAAATCGTGGAGTACTCGTCC 833818 Query 105032 AAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCA 105091 || || || | || ||||| ||| | || || ||||| || || || ||| | || Sbjct 833817 AAGGACGAAATTGCCGTGTGCAACTTGGCCTCGATCGCGGTCAACATGTTTGTCAAACCG 833758 Query 105092 GAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAAC 105151 || ||| | | ||| | | || ||| | ||||| | |||| ||||| ||||| Sbjct 833757 GA---CAAGTCGTATGACTTCCAGAAGCTCAAGGAAGTCTCTAAAATAGTCACAAAAAAT 833701 Query 105152 CTAAACAGAGTTATTGATAGAAATTTTTACCCCGTT---GAGACTGCTCGTAAATCTAAT 105208 || |||| | |||| || | || | ||||| ||| ||| | || || || Sbjct 833700 CTGAACAAAATTATCGACATCAACTACTACCCAGTTCCGGAGGCCAAGCG---CTCCAAC 833644 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGT 105268 ||| | ||||| || || || ||||||| ||||| | || || | ||||| || Sbjct 833643 ATGCGTCACCGCCCGATCGGAATCGGTGTCCAGGGAATGGCCGACGCGTTCATCCTGATG 833584 Query 105269 CGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATG 105328 ||| | | | || ||| ||||| | | | || || || || || ||||| Sbjct 833583 CGCTTCCCGTACGAGAGCGAGGAAGCCCAAAAGCTGAACCAGCAAATCTTCGAAACCATC 833524 Query 105329 TATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACC 105388 || ||| || || ||||| || | || | || ||| || || | || ||||| Sbjct 833523 TACTACGGTGCCCTCGAGGCAAGCTGTGAAATTGCCGAGAAGGACGGAACCTACGAAACG 833464 Query 105389 TTTGAGGGTTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGG--GAAGGTGAG 105445 | || || | ||| | || |||||| | || || | || |||||| |||| Sbjct 833463 TACGATGGCTGTCC-GGTTAGCAAGGGCATCCTGCAGTACGACATGTGGAACAAGGCCCC 833405 Query 105446 A-CCAAGCTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 105504 | || | || | ||||||| | ||||||||| ||| || | || | || Sbjct 833404 ATCCGACCT---GTGGGACTGGGCCCCACTCAAGGAAAAAATCGCCAAGCACGGAGTCCG 833348 Query 105505 TAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 105564 ||| || ||| | || ||||||||||| || |||||||| |||||| | || || || Sbjct 833347 AAACTCCCTTCTCCTCGCCCCAATGCCAACCGCGTCCACCGCGCAAATCCTCGGCAACAA 833288 Query 105565 TGAATGCTTTGAACCCTACACGACGAACATCTA 105597 |||| ||| ||||| ||||| | ||| |||| Sbjct 833287 CGAATCCTTCGAACCGTACACCTCCAACGTCTA 833255 >seq3141 Length=1574671 Score = 96.9 bits (106), Expect = 4e-15 Identities = 119/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||||| ||||| | |||| || || || ||||| ||||||||| || ||| Sbjct 1345561 CTTTGGCGAGCGCGTGGTCGCTTTCGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTT 1345620 Query 94857 CTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 | ||| | || | |||||||||||||| || |||||||| || || |||||| |||| Sbjct 1345621 C-GCGTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGCCTGACCTTCTCGAACG 1345679 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||| ||||| || ||||||||||||||| || ||||| Sbjct 1345680 AGCTGATCTCGCGCGACGAGGGACTCCACACCGACTTTGC 1345719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583237681000040