Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq3122 113 3e-20 seq2724 102 5e-17 seq3140 98.7 6e-16 seq3133 91.5 9e-14 >seq3122 Length=1344033 Score = 113 bits (124), Expect = 3e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||||||||||||| |||||| || || || || |||||||| || || Sbjct 597405 AGACGCAGAACCAAATGGAGAGTGGACTCCTTCTGGATATTGTAGTCTGAAAGAGTACGA 597346 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || ||||| || || || | ||||||||| || || || | ||||||| Sbjct 597345 CCATCCTCCAACTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGGGGGATTCCCTCC 597286 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || ||| |||| |||| |||||| | ||| || || | || || |||| || Sbjct 597285 TTATCTTGGATC-TTTGCCTTAACGTTTTCAATGGTATCCGAGGGTTCGACCTCCAGAGT 597227 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || ||||| || |||||||| Sbjct 597226 GATGGTCTTGCCAGTCAAAGTCTTCACGAAGATCTGCAT 597188 Score = 102 bits (112), Expect = 5e-17 Identities = 160/225 (71%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||||| || ||||||||||| || ||||| || || || | || || Sbjct 595125 AGACGCAGTACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCCGACAAGGTACGA 595066 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || || || || || || || || | ||||||||| || || || | ||||||| Sbjct 595065 CCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGAGGGATTCCCTCC 595006 Query 34609 TTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || ||| || | ||||||| | ||| || || | ||| || |||| ||| Sbjct 595005 TTATC-CTGAATCTTGGCTTTAACGTTTTCAATGGTATCAGAGGGCTCGACCTCCAGGGT 594947 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTGA 34711 || || || || || | || ||||| || |||||||| ||||| Sbjct 594946 GATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATCGTTGA 594902 Score = 98.7 bits (108), Expect = 6e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 34492 CGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCG 34551 ||||| |||||||| || ||||||||||| || ||||| ||||| || || || || | Sbjct 598086 CGCAATACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTACGACCA 598027 Query 34552 TCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTG 34611 || || || || || || || || || | ||||||||| || || || | ||||||||| Sbjct 598026 TCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGGGGGATTCCCTCCTTA 597967 Query 34612 TCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 || ||| || | |||||| | || || || | ||| || |||| ||| || Sbjct 597966 TC-CTGAATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACCTCCAAGGTGAT 597908 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || |||| || || || || |||||||| Sbjct 597907 GGTCTTTCCCGTTAGAGTCTTGACGAAGATCTGCAT 597872 Score = 86.0 bits (94), Expect = 4e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| ||| || || |||||| || ||||| || || ||||| || || Sbjct 595353 AGACGCAGGACCAGATGTAGTGTAGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTACGA 595294 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 | || || | || ||||| || || || ||||||||||| || || || | ||||||| Sbjct 595293 CCATCCTCCAACTGCTTACCAGCGAAGATCAAACGCTGTTGATCTGGAGGGATTCCCTCC 595234 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 || || |||| || | ||||| | || || || | ||| || |||| ||| Sbjct 595233 TTATCCTGGATC-TTGGCCTTAACATTCTCGATGGTATCCGAGGGCTCGACCTCCAAGGT 595175 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || || || || || || || || || |||||||| Sbjct 595174 GATGGTCTTGCCAGTCAAAGTCTTGACGAATATCTGCAT 595136 >seq2724 Length=367895 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| |||||| || |||||| || ||||| ||||| ||||| || || Sbjct 202134 AGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGG 202193 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || ||||| || || | |||||| || || || || | ||||||| Sbjct 202194 CCGTCCTCCAACTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCC 202253 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| | ||| || || | ||| Sbjct 202254 TTGTCCTGGATC-TTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCGAGGGT 202312 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || |||||||| | || ||||| || ||||||||| Sbjct 202313 GATGGTCTTACCGGTCAGGGTCTTCACGAAGATCTGCATG 202352 Score = 102 bits (112), Expect = 5e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||||| || || || |||||| || ||||| ||||| || | || || Sbjct 202818 AGACGCAGCACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAATCCGACAAGGTACGA 202877 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || ||||| || || | |||||| ||||| || || | ||||||| Sbjct 202878 CCGTCCTCCAACTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCC 202937 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 |||||| |||| || | || ||| | || ||||| | ||| || |||| || Sbjct 202938 TTGTCTTGGATC-TTAGCCTTGACGTTCTCGATGGTGTCCGAGGGCTCGACCTCCAAAGT 202996 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || || || ||||| | || ||||| || ||||||||| Sbjct 202997 AATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 203036 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| |||| |||||| || |||||| || ||||| ||||| ||||| || || Sbjct 203046 AGACGCAGGACCAGATGGAGCGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTGCGG 203105 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || | || || ||||| || || | |||||| ||||| ||||| | ||||||| Sbjct 203106 CCGTCCTCCAACTGCTTTCCGGCGAAAATCAGACGCTGCTGGTCTGGCGGGATTCCCTCC 203165 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667 ||||| |||| || | || || | || ||||| ||| || || | ||| Sbjct 203166 TTGTCCTGGATC-TTAGCCTTGACATTCTCGATGGTGTCCGACGGCTCGACCTCGAGGGT 203224 Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || |||||||| || || || || || || ||||| Sbjct 203225 GATGGTCTTACCGGTCAAAGTCTTGACGAAGATTTGCAT 203263 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||||| ||||| ||| || || ||||| || ||||| ||||| ||||| || || Sbjct 202362 AGACGCAGCACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGAGTACGA 202421 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || ||||| || ||||| || || | |||||| || || || || | ||||||| Sbjct 202422 CCGTCCTCGAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCC 202481 Query 34609 TTGTCTGTGATCTT 34622 ||||| |||||| Sbjct 202482 TTGTCCTGGATCTT 202495 >seq3140 Length=1521851 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/226 (71%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548 ||||| | ||||| ||||| ||| |||||| || ||||| || || || || || || Sbjct 429106 AGACGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 429165 Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608 |||| || || || || ||||| || || |||||||| || || ||||| | ||||||| Sbjct 429166 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGGGATTCCCTCC 429225 Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCT--CTCCACTTCCACG 34665 ||||| |||| || | ||| || | || ||||| || | ||| || || | | Sbjct 429226 TTGTCCTGGATC-TTGGCTTTGACATTCTCGATCGTGTC--CGATGGCTCGACCTCAAGG 429282 Query 34666 GTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGA 34711 || || || || || || | || || || || ||||||||| ||| Sbjct 429283 GTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATGGTGA 429328 >seq3133 Length=1421877 Score = 91.5 bits (100), Expect = 9e-14 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || |||| ||||| ||| || ||| |||||| || ||||| || || | Sbjct 291922 CGCCACCACGCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 291863 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 |||| || || | || || || || || ||||| || || | |||||| || ||||| | Sbjct 291862 AAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGG 291803 Query 34598 GCACTCCCTCCTTGTCTGTGATCTT 34622 | | |||||||||||| |||||| Sbjct 291802 GGATTCCCTCCTTGTCCTGGATCTT 291778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314717436782843