Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq3133 98.7 9e-16 seq2724 84.2 2e-11 >seq3133 Length=1421877 Score = 98.7 bits (108), Expect = 9e-16 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| ||| || ||| ||| || || || || || || | ||| || || | Sbjct 291909 GCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCC 291850 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| || || || ||||||||||| || | ||| | | ||| || Sbjct 291849 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGGGGATTCCCTCCTT 291790 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 |||| ||| || |||| || | | ||||||| || ||| || || | ||||| Sbjct 291789 GTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGGACGGCTCGACCTCGAGAGTGAT 291730 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | || ||||| || ||||| || ||||| |||||| Sbjct 291729 GGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATC 291693 >seq2724 Length=367895 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| ||||| ||| || || ||||| || |||| || || || | || ||| Sbjct 202599 ACCAGATGGAGCGTAGACTCCTTCTGGATATTGTAGTCGGACAGAGTACGACCATCTTCA 202658 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| || || || || || |||||||||||||| | || | || || |||||| | Sbjct 202659 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCCTGG 202718 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || | ||| || |||| ||||| | || Sbjct 202719 ATCTTGGCCTTGACATTCTCGATGGTGTCCGAGGGCTCGACCTCCAGAGTGATGGTCTTG 202778 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| ||||| || ||||| ||||| Sbjct 202779 CCGGTCAGGGTTTTCACGAAGATCTGCAT 202807 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| ||| || || || || || || || ||||| | ||| || || |||| || Sbjct 202370 CACCAGATGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAAAGAGTACGACCGTCCTC 202429 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 || || || || || || |||||||||||||| || | ||| | | ||| |||||| Sbjct 202430 GAGTTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTG 202489 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || || | || | | ||||||| | ||| || |||| ||||| | || Sbjct 202490 GATCTTGGCCTTCACGTTCTCGATCGTATCGGAAGGCTCGACCTCCAGAGTGATGGTCTT 202549 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || ||||| ||||| Sbjct 202550 GCCAGTCAGTGTCTTCACGAAGATCTGCAT 202579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429528999539123