Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3140 122 6e-23 seq3133 100 2e-16 seq2724 96.9 2e-15 seq3122 89.7 3e-13 >seq3140 Length=1521851 Score = 122 bits (134), Expect = 6e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||| || || || || | || Sbjct 429323 ATGCAGATCTTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGCCATCG 429264 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| | || | | ||||| || || | ||||||||||| Sbjct 429263 GACACGATCGAGAATGTCAAAGCCAAGA-TCCAGGACAAGGAGGGAATCCCGCCAGATCA 429205 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||||| || || |||||||| || ||||| |||| |||||| | ||| ||||| Sbjct 429204 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAA 429145 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||||||||| Sbjct 429144 CATCCAGAAGGAGTCCACA 429126 >seq3133 Length=1421877 Score = 100 bits (110), Expect = 2e-16 Identities = 145/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||||||||| || || ||||||||||| || || | | Sbjct 291694 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATCACTCTCGAGGTCGAGCCGTCC 291753 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || || ||||| || || | || || ||||| Sbjct 291754 GATACGATCGAGAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGAATCCCCCCGGATCA 291812 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCA--CTTTAGGCGATTAC 23787 |||||| | || || |||||||| || ||||| || | |||| |||| | || ||| Sbjct 291813 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCG--GACTAC 291870 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 291871 AACATCCAGAAGGAGTCCAC 291890 >seq2724 Length=367895 Score = 96.9 bits (106), Expect = 2e-15 Identities = 144/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || || || Sbjct 202351 ATGCAGATCTTCGTGAAGACCCTGACCGGTAAGACCATCACCCTCGAGGTCGAGCCCTCG 202292 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || | | ||||| || || | || |||||||| Sbjct 202291 GACACCATCGAGAATGTCAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCAGATCA 202233 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC--TTTAGGCGATTAC 23787 |||||| | || || ||||| || || |||| |||| ||||| ||| || ||||| Sbjct 202232 GCAGCGTCTTATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGCACCCTTTCGG--ATTAC 202175 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 202174 AACATCCAGAAGGAGTCTAC 202155 >seq3122 Length=1344033 Score = 89.7 bits (98), Expect = 3e-13 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || |||||||| || ||||| | || || || || || Sbjct 597872 ATGCAGATCTTCGTCAAGACTCTAACGGGAAAGACCATCACCTTGGAGGTCGAGCCCTCG 597931 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | || | || || || || || | || |||||||| Sbjct 597932 GATACCATCGAGAACGTTAAGGCCAAGA-TTCAGGATAAGGAGGGAATCCCCCCAGATCA 597990 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || || || || ||||| || | || || | |||||||| Sbjct 597991 ACAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACCCTGTCGGATTACAA 598050 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGATCAG 23842 ||| || || ||| |||| | ||||| || || | ||| | ||||| |||| Sbjct 598051 CATCCAGAAGGAGAGCACACTGCATTTGGTATTGCGATTGAGGGGAGG-TCAG 598102 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || |||||||| || || || || || Sbjct 596960 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACTCTGGAGGTCGAACCCTCG 597019 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || || || || || || || | || ||||||||| Sbjct 597020 GATACCATTGAAAACGTTAAGGCCAAGATCCAAGATAAGGAGGGAATCCCCCCAGATCAA 597079 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || ||||| || | || || || || |||||| Sbjct 597080 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAAC 597139 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || ||||| || | ||| | ||| | | |||| ||||| Sbjct 597140 ATCCAGAAGGAGTCTACCCTTCATCTGGTTCTGCGTCTGCGCGGAGG 597186 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || |||||||| || || || || || Sbjct 597188 ATGCAGATCTTCGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTCGAACCCTCG 597247 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||| || || || || || | || ||||||||| Sbjct 597248 GATACCATTGAAAACGTTAAGGCAAAGATCCAAGATAAGGAGGGAATCCCCCCAGATCAA 597307 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || |||| || | || ||| | || ||||| Sbjct 597308 CAGCGTCTGATCTTCGCTGGTAAGCAGTTGGAGGATGGTCGTACTCTTTCAGACTACAAT 597367 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || |||||||| | ||||| ||| | | |||| ||||| Sbjct 597368 ATCCAGAAGGAGTCCACTCTCCATTTGGTTCTGCGTCTGCGCGGAGG 597414 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || | || || || || |||||||| || || || || || Sbjct 597644 ATGCAGATCTTCGTCAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTCGAACCCTCG 597703 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | || ||||| || || || || | || ||||||||| Sbjct 597704 GATACCATTGAAAACGTTAAGGCCAAAATCCAGGATAAGGAGGGAATCCCTCCAGATCAA 597763 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || ||||| |||| || || || || |||||| Sbjct 597764 CAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGACGGTCGTACCTTGTCGGACTACAAC 597823 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 597824 ATCCAGAAGGAGTCTAC 597840 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| || || || || || | Sbjct 594908 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCT 594967 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| | ||| || ||| || || || || | || ||||||||| Sbjct 594968 GATACCATTGAAAACGTTAAAGCCAAGATTCAGGATAAGGAGGGAATCCCTCCAGATCAA 595027 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || || || || || ||||| || | || || || || |||||| Sbjct 595028 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAAC 595087 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||| |||| | ||||| || Sbjct 595088 ATCCAGAAGGAGAGCACACTGCATTTGGT 595116 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||| || || || || | || Sbjct 595820 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATCACCCTGGAGGTCGAACCTTCG 595879 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || || |||| | || | || || || || || | || |||||||| Sbjct 595880 GATACCATCGAGAACGTTAAGGCCAAGA-TTCAGGATAAGGAGGGAATCCCTCCAGATCA 595938 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||| | || || || || || || ||||| || | || || || || ||||| Sbjct 595939 ACAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAGGATGGTCGTACCTTGTCGGACTACAA 595998 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || |||||||| ||||||| || | | |||| ||||| Sbjct 595999 CATCCAGAAGGAGTCCACTCTACATTTGGTCCTGCGTCTGCGCGGAGG 596046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337996537090868