Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq2443 98.7 8e-16 >seq2443 Length=228914 Score = 98.7 bits (108), Expect = 8e-16 Identities = 221/329 (67%), Gaps = 11/329 (3%) Strand=Plus/Minus Query 103184 CAATTATTCCACAGCCCAAACGGCCGCCCGAGTTTCCGGTAGTTTTGCTCAACGGATGAT 103243 |||| | || ||| ||| ||| |||||| |||||||| || ||||||| | || Sbjct 221124 CAATCACGCCGCAGGCCAGCCGGGCGCCCGCATTTCCGGTGGTCTTGCTCAGCTCGTGTC 221065 Query 103244 CGGTGAGGCCCAAATCGTCTCTGTCCGTGTGCACGACCAAACTTCGGCCGATAATGTTGT 103303 || | ||||| |||||| || | ||||||||||| | ||||| | ||| | Sbjct 221064 CGCCCACGCCCAGATCGTCCGGATCGGCGTGCACGACCACGGTGCGGCCCAGGATGCTCA 221005 Query 103304 ACGGGCCGAACAGAAACGCTACGCT-GTCCGTCATATTGATTTCGGTCAGGGCGTCG--- 103359 ||| ||| ||| | | | ||| ||| || || | || | || || | | | Sbjct 221004 GCGGTCCGCTCAGCGA-GATCTGCTTGTCGGTGATGTCGACCTTGGCCACGCCCCCCGCA 220946 Query 103360 TAGCCCGCCGATTTGACGTTGCCCAAATCGCCAACGTGTCTGACGAGCGCGTCGGGCGCG 103419 | | || || || ||||||||||| || |||| | |||| |||||| || ||| Sbjct 220945 TCGGCCACC------ACATTGCCCAAATCTCCGGCGTGACGGACGGACGCGTCCGGGGCG 220892 Query 103420 CCGTGCGTTTCGCCGGTGGGATTAAAATGTTCGCCGGCCGACGTGCAGCCGTTGCTTGTG 103479 ||||| | |||| || ||||| || |||||||| ||||| |||||| | || Sbjct 220891 CCGTGTTCCTTGCCGTGCGGGTTAAAGTGCGGCCCGGCCGAGGTGCACCCGTTGGTGTTG 220832 Query 103480 TCGCCAAACTCGTGCACGTGAAAACCGTG 103508 |||||||||||||| | ||| || ||||| Sbjct 220831 TCGCCAAACTCGTGGATGTGGAAGCCGTG 220803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409644968018289