Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq2849 105 5e-18 >seq2849 Length=471161 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || ||||||||||| || ||||||| ||| || || | ||||||||| || || || || Sbjct 133939 AGTCCGGTGACGTGGGCAATCATGTGCGTAAGCAGTGCGTAGCTGGCAATATTGAACGGT 133998 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 ||||| || ||||||||| |||| | ||||| || ||||| || | ||||||||| Sbjct 133999 ACCCCCAGGCCCATGTCCGCTGATCGTTGGTAAAGTTGGCATGACAATTCTCCGTCGGAA 134058 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGACCCAAGTCTTTGGGG 29893 ||| | |||||| | ||||| || || || ||||| | | ||| ||| Sbjct 134059 ACGAAGAACTGAGCTAAACAGTGGCATGGTGGTAGAGCCATTTGCGGAATGTCCACCGGG 134118 Query 29894 TTCCAGGCACACACGATGATGCG 29916 ||||| || | || ||| ||||| Sbjct 134119 TTCCAAGCGCTCATGATAATGCG 134141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406147503188506