Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3071 255 8e-63 seq3141 84.2 3e-11 >seq3071 Length=929925 Score = 255 bits (282), Expect = 8e-63 Identities = 1198/1885 (64%), Gaps = 32/1885 (2%) Strand=Plus/Plus Query 75367 CTTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACC 75426 ||| |||| |||||||| |||| | || ||||| || || || |||||||| || Sbjct 832867 CTTGTCCACGGTGAACTGGATGGCGTTGACGGCGGGTTTGGTGCGCAGGTAGTACATTCC 832926 Query 75427 AGTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGG 75486 ||||| || |||| |||| |||||||| || || || |||||| || | || Sbjct 832927 GGTTTTGAGTCCCATCTTCCAGCCGTAGAAGTGGATCGAGGTGAGTTTGCCGTAGTTGGG 832986 Query 75487 ATCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGC 75546 || || | || || || | |||||| || |||||||| || || | || || || Sbjct 832987 TTCCGCGACGTGGATGTTGAACGACTGGGACTGGTCGATGAAGGCGCCCCGGTCGGCGGC 833046 Query 75547 CATTTTTATAATGGTCTTTTGA-GGA-ATTTCCCAAATAGTTTTGAAAACTTGTTTGATA 75604 |||||| || ||| ||||| ||| |||||||| | |||||| | | | ||| Sbjct 833047 CATTTTGATGCAGGT--TTTGACGGAGATTTCCCACACCGTTTTGTAGAGCTCGCGGATG 833104 Query 75605 TCATCTGGAAGATTT-GT--ATTT--TGAATGGATCCGCCATCAGATATAATTGTATTCT 75659 | | || ||||| || || | || ||||| ||| | || ||| | |||| Sbjct 833105 TGCTTGGG--GATTTCGTCGATGTGCTGGATGGAGCCGTTGCTGGCGATGATTTTGTTCT 833162 Query 75660 TGATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAA 75719 | || || || | ||||| | ||||| | || | |||||||| | || || | Sbjct 833163 TCATGTCGTCGTCCCACAGCTCGAGTTCGGTGAGGTCTTTGAGGAGATGGTGGTTGACGA 833222 Query 75720 TTTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAG 75779 || || || || |||| || | || |||| | || ||| || ||||| | | Sbjct 833223 CCTGGAACTCGCCGGACAGCACGCGCCGGTTGTAGACGTTGGAGGTGTACGGTTCGAAGG 833282 Query 75780 ATTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAAC 75839 |||| ||||| || | ||||| || || || || || ||||| || || | | | Sbjct 833283 ATTCGTTGTTGCCGAGGATTTGCGCGGTGGACGCGGTTGGCATTGGGGCGAGGAGAAGGG 833342 Query 75840 TATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTG 75899 |||| || || || | |||||| || || || ||| ||||| || || | Sbjct 833343 AGTTTCGGACTCCGTGCTTGGCGATTTTTTCCTTGAGTGGGGCCCAGTCCCACAGGTCGG 833402 Query 75900 ATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTAT 75959 |||| | | ||| | ||||| || || || || |||||| | | |||| | Sbjct 833403 ATGGGGCCTTGTTCCACATGTCGTACTGCAGGATGCCCTTGCTAACCGGACAGCCATCGT 833462 Query 75960 ATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAAT 76019 | |||||||| || |||||||| || || | ||| || || ||||| | |||||||| | Sbjct 833463 ACGTTTCGTAGGTTCCGTCCTTCTCGGCAATTTCACAGCTTGCCTCGAGGGCACCGTAGT 833522 Query 76020 AAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTCAAGACTATCAAAAGGATAAT 76079 | || |||||||| || | || || || | ||| ||||| || || | || | Sbjct 833523 AGATGGTTTCGAAGATTTGCTGGTTCAGCTTTTGGGCTTCCTCGCTCTCGTACGGGAAGC 833582 Query 76080 GTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCT 76139 | | || || || || || || | |||||| || || || || || || | || | | Sbjct 833583 GCATCAGGATGAACGCGTCGGCCATTCCCTGGACACCGATTCCGATCGGGCGGTGACGCA 833642 Query 76140 TATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGAT 76199 | ||||| | || || |||| ||||| || || || || |||||||| || |||| Sbjct 833643 TGTTGGAGCGCTTGGCCTCCGGAACTGGGTAGTAGTTGATGTCGATAATTTTGTTCAGAT 833702 Query 76200 TTCTGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA----TTTTCCATCT 76255 || | |||| |||| || ||||| || || | || ||| | || ||| | Sbjct 833703 TTTTTGTGACTATTTTAGAGACTTCCTTGAGCTTCTGGAAGTCATACGACTTGTCCGGTT 833762 Query 76256 ATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTG 76315 | |||||||| || | || || || || | || || ||||| | || | | ||| Sbjct 833763 -TGACAAACATGTTGACCGCGATCGAGGCCAAGTTGCACACGGCAATTTCGT---CCTTG 833818 Query 76316 GCA---TATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGT 76372 | || | | || |||||||| || || |||||| || || || | || || Sbjct 833819 GACGAGTACTCCACGATTTCCGTGCAAAGGTTCGAACACTTTATGGTGCCGATGTTCTGC 833878 Query 76373 TGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATC 76432 ||||||||||| ||| || | |||||| || || | |||| ||| || || | | Sbjct 833879 TGGTTGCTCTTCCGGTTGCAAGCGTCCTTGTACAGCATGTACGGCACTCCCGTCTCGACC 833938 Query 76433 TGTGATTCGATAATAGATTTCCAGACGACTCT-AGCTTTTATTATAGATTTGTATCG--C 76489 || || ||||| || | ||| | || || ||| || | || |||| || | Sbjct 833939 TGCGACTCGATGATCGCGAACCACA-GATCCTGAGCCTTGACCTTACGAATGTAGCGTCC 833997 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 ||| || || || || || | | || || || || |||||| || | Sbjct 833998 TTCGTTC--TCGTACGTCGTGTACAGCTTCTCGAACTCCTCACCCCAAGTTTCCGGGAGT 834055 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || ||||| || | ||| ||||||| |||| || | | ||| || || ||||| Sbjct 834056 CCGGGACAGTCGTGCGGGCACATCAGACACCAGTCCTCGTTAGCCTCGACTCGCTTCATG 834115 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || ||||| || ||||| || || || | || || | | || || || || Sbjct 834116 AACAGATCCGGAATCCACAGCGCGTAGAACATGTCCCGAGCGCGGACCTCCTCCTTGCCG 834175 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 || || || || | || | ||||| | ||||| ||||| ||||| ||||| ||| Sbjct 834176 GTGTTTTTCTTCAAGTCCAAAAACTCAAAGATATCTCCGTGCCACGGTTCCAGATAGATC 834235 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | | || || || || || || ||||| || | || | || ||||| || ||| Sbjct 834236 GCAAACGCCCCGGGCCGCTTGTTGCCGCCCTGGTCAACGTACCGCGCCGTGTTGTTGTAA 834295 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 || |||| ||| || | | ||||| || | || || ||||| | ||| || | || Sbjct 834296 ACCCTCAGCATCGGCACCAGCCCGTTCGAGATCCCGTTCGTTCCGGCAATGTACGTGCCC 834355 Query 76850 CATGCACGAAT--ATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAG 76907 || || || | | | || | | || ||||| || ||| || ||||| | | Sbjct 834356 TTCGCCCGGATGCAGTGCACATTCACA--CCGATTCCACCCGCCGACTTGGAGATCAACG 834413 Query 76908 CACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAA 76967 | || | |||| ||||| || || || || |||||||| || |||| | | || | Sbjct 834414 CGCACTGCTTCAGCGTGTCGTAAATTCCGTCGATACTATCGTCGCTCATCGTCAACAGGA 834473 Query 76968 AACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAG 77027 | || |||| || || | || | || ||||| || || || || || | Sbjct 834474 AGCACGACGACAGCTGCGGACGCCGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGCG 834533 Query 77028 TGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGAT 77087 | || | || || || || ||||| || ||||| | || || || ||| | Sbjct 834534 TAAAGTACCGCTCCGACAGCAGGTTGTACGTCTCAATGGCCGCGTCAATGTCCAGCCCGT 834593 Query 77088 GAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTA 77147 |||| || || || || ||||||| ||| ||||| || || || || ||| || | Sbjct 834594 GAATGCCAACCGCCACCCGCATCAGCATGTGCTGCGGACGCTCCACCACCTTGCCCTTGA 834653 Query 77148 TTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 77207 | |||| || ||| || |||| || || || ||||| |||||||| |||||| | Sbjct 834654 TCTTCAGCAGGTACGACCGCTCCAGCGTCTTGAAGCCAAAGTAGTTGTAGCCAAAGTCCC 834713 Query 77208 TTTCGTAAATAATAACCGAATTTAG 77232 ||||| || || ||||||| || Sbjct 834714 GGTCGTAGATGATGGCCGAATTAAG 834738 >seq3141 Length=1574671 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| || || || || || ||||| || |||||||| |||||||| || || | |||| Sbjct 1345680 TCGTTCGAGAAGGTCAGGCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGACGCG 1345621 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || || ||||| ||||| || || || ||||| ||||| | | ||| || | Sbjct 1345620 AAGCTGCCGCTGAAGAAGATGCCCTCGACGGCGGCGAAAGCGACCACGCGCTCGCCAAAG 1345561 Query 46792 CTGGCATCATTAT--GA-ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGC 46848 |||| | || || ||||| | ||||| |||||||||||||| ||||| ||| Sbjct 1345560 TTGGCGTGCTTGCTCGAGATCCAGTTCATCGCCCAGTCAGCCTTTTTCTTCACACAGGGC 1345501 Query 46849 ATTGTTTCTATAGCATTAAA 46868 | || || || || || || Sbjct 1345500 AGCGTCTCGATCGCGTTGAA 1345481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712906141062720