Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Culex_20quinquefasciatus_20[refseq_20GCF_5F000209185.1_202007-04-23] 3,171 sequences; 579,042,118 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq3133 147 2e-30 seq3140 140 3e-28 seq3122 134 1e-26 seq2724 125 7e-24 >seq3133 Length=1421877 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| || || || || | |||||||||||| ||| ||||||||| ||||| ||||| | Sbjct 291922 CGCCACCACGCAGGCGCAGCACCAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCCG 291863 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 | |||||||| | || || ||||||||||||||||| ||||| ||||| || |||| || Sbjct 291862 AAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCCGGGG 291803 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | | |||||||||| ||| || ||| | | | || ||| || ||| | Sbjct 291802 GGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGGACGGCTCGA 291743 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| | || || || |||||||| || || || ||||| |||||||| Sbjct 291742 CCTCGAGAGTGATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 291694 >seq3140 Length=1521851 Score = 140 bits (154), Expect = 3e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||||| || || ||| ||||||||| ||||| |||||||| Sbjct 429097 CCACCGCGCAGACGGAGCACCAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCGGAC 429156 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||||||||| |||| ||||| || || | || Sbjct 429157 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGATCTGGCGGG 429216 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| || | || |||| || | | ||||| | ||| || Sbjct 429217 ATTCCCTCCTTGTCC-TGGATCTTGGCTTTGACATTCTCGATCGTGTCCGATGGCTCGAC 429275 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || || || || |||||||| ||||| ||||| ||||||||| Sbjct 429276 CTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACGAAGATCTGCATG 429324 >seq3122 Length=1344033 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| |||||| |||||||||||||| ||||| ||||| || Sbjct 595134 CCACCGCGCAGACGCAGTACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAGTCCGAC 595075 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||| || ||||| ||||| |||||||| || | || Sbjct 595074 AAGGTACGACCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGAGGG 595015 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| ||| | || |||| |||| | | || || | ||| || Sbjct 595014 ATTCCCTCCTTATCC-TGAATCTTGGCTTTAACGTTTTCAATGGTATCAGAGGGCTCGAC 594956 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||| || || || || || ||||| ||||| ||||| |||||||| Sbjct 594955 CTCCAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCAT 594908 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGT-GCTCTCCTTCTGAATGTTATAGTCGGA 41694 || || || || || | ||||||||||||||| | || ||||||| | ||| |||||||| Sbjct 593309 CCACCCCGCAGGCGCAGCACCAGATGCAGCGTCGATC-CCTTCTGGACGTTGTAGTCGGA 593251 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || ||| | || || ||||||||||||||||| ||||||||||| || || | ||| Sbjct 593250 CAAGGCGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGATCTGGGGG 593191 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||||||||| ||| || ||| | | | |||||| | ||| || Sbjct 593190 GATACCTTCCTTGTCCTCGATCTTGCCCTTGATGTTCTGGATCGTGTCGACGGGCTCGAC 593131 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || ||||| || || || ||||| ||||| ||||||||| Sbjct 593130 GTCCAGGGTAATGGTTTTCCCGGTGAGGGTCTTCACGAAGATCTGCATG 593082 Score = 125 bits (138), Expect = 7e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 41648 CGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCG 41707 || || |||| |||||| |||||||||||||| ||||| || || || ||||| || | Sbjct 598086 CGCAATACCAAATGCAGTGTGCTCTCCTTCTGGATGTTGTAATCCGACAGGGTACGACCA 598027 Query 41708 TCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTG 41767 || || |||||||| || ||||| ||||| |||||||| || | ||| | | |||||| Sbjct 598026 TCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGTTGATCTGGGGGGATTCCCTCCTTA 597967 Query 41768 TCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTAT 41826 ||| ||| | || || | |||| | | || || | ||| ||||||| || || Sbjct 597966 TCC-TGAATCTTGGCCTTAACGTTCTCGATGGTATCCGAGGGCTCGACCTCCAAGGTGAT 597908 Query 41827 CGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || ||||| || ||||| ||||| |||||||| Sbjct 597907 GGTCTTTCCCGTTAGAGTCTTGACGAAGATCTGCAT 597872 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||||||||| | |||||||| || || ||||||||| ||||| ||||| || Sbjct 597642 CCTCCGCGTAGACGCAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAC 597583 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || || |||||||| || ||||| ||||| |||||||| || | || Sbjct 597582 AAGGTACGACCATCCTCCAGCTGCTTACCAGCGAAGATCAGACGCTGTTGATCTGGAGGG 597523 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||| ||| || | || || | |||| | | || || | ||| || Sbjct 597522 ATTCCCTCCTTATCC-TGGATCTTGGCCTTAACGTTTTCAATGGTATCCGAGGGCTCGAC 597464 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||| | || || || || || |||| ||||| ||||| |||||||| Sbjct 597463 CTCGAGGGTAATGGTCTTTCCAGTCAAAGTCTTGACGAAGATCTGCAT 597416 >seq2724 Length=367895 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 201669 CCACCGCGAAGACGAAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 201728 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| || ||||| ||||| ||||| ||||| | || Sbjct 201729 AGAGTACGACCGTCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGGTCTGGAGGG 201788 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| || ||||| | | ||||| | ||| ||| Sbjct 201789 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCCGAGGGCTCAACC 201848 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| ||||| ||||| || || |||||||| Sbjct 201849 TCCAAGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 201895 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || || || |||||||| ||||| || || || Sbjct 201897 CCTCCGCGGAGACGCAGGACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAATCCGAC 201956 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||| || | || ||||||||||| |||||||| || || ||||| || || | ||| Sbjct 201957 AAGGTACGACCATCCTCGAGCTGCTTTCCGGCGAAGATAAGACGCTGCTGATCTGGGGGG 202016 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||| | | | || ||| || || ||| Sbjct 202017 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCGATCGTATCGGACGGTTCGACC 202076 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || ||||| ||||||||||| ||||| |||||||| Sbjct 202077 TCCAGAGTAATGGTCTTACCGGTCAGCGTCTTCACGAAGATCTGCAT 202123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462285675425200