Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq10275 122 6e-23 >seq10275 Length=574352 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 102038 TATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTTCATCT 102097 ||||| || || ||||| | |||||| || ||||| |||||||| | ||| || || ||| Sbjct 359905 TATTCAGCACCAAAATGTCGCCACTGGAAACCATAGACAGGTCCTAAATCACCCTCCTCT 359964 Query 102098 CTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAATGTGC 102157 || ||| ||| ||| |||||| || | | || ||||| ||||||||||||| Sbjct 359965 CTATCAGTAAATCCACAAGAATCTAAGAAGGCACGTGAACCATTTTCATCCCAAATGTGA 360024 Query 102158 ACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCT 102217 | || ||| | |||||| | || |||||| ||||||||||||||||||| Sbjct 360025 ATACCCTTATCTGTCAATTCTTTGGAATTTGTTGATCCTTTGATAAACCACAACAGTTCC 360084 Query 102218 TCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAA 102264 ||||| || ||| ||| |||||| ||||| || | | |||||| Sbjct 360085 TCAACCACTGCTCGCCAGAATACTTGTTTAGTTGTCAGTAATGGAAA 360131 Score = 104 bits (114), Expect = 2e-17 Identities = 148/207 (71%), Gaps = 6/207 (3%) Strand=Plus/Plus Query 101752 AGTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCC 101811 ||| |||||||| |||||| |||| || | ||||| || |||||||||||||| || Sbjct 359509 AGTAACATGAGCGATCATGTAAGTCAACAAGGAATACGATGCTATGTTAAATGGCACACC 359568 Query 101812 TAACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATA 101871 ||| ||||| || || ||||||||| || || ||| | | ||| | | || || Sbjct 359569 TAAACCCATGTCTGCACTTCTTTGATAAAGCTGTGTGGACAATTCTCCGTTATTTACGTA 359628 Query 101872 AAATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAAC---ATT 101928 |||||| | || |||| || |||||||| ||||||| ||||| || ||| ||| Sbjct 359629 AAATTGTATAAAAGCATGGCATGGCGGCAATGCCATTTTCGGAATATC---AACTGGATT 359685 Query 101929 CCAAGCACACATTAACATCCTTCTATC 101955 ||| || |||||| || | ||| || Sbjct 359686 CCAGGCTGACATTATAATACGTCTGTC 359712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361183490123129