Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq10371 123 3e-23
seq9873 109 7e-19
seq9983 82.4 9e-11
>seq10371
Length=124667
Score = 123 bits (136), Expect = 3e-23
Identities = 189/267 (71%), Gaps = 2/267 (1%)
Strand=Plus/Plus
Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463
|| ||||| || || | |||| | |||||||||| || || ||||| || |||||
Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675
Query 54464 CATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522
|| ||| || || || ||| || || || || || ||| || || | ||||||
Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734
Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582
|| || || || | ||| ||||| |||||||| ||||| || ||||| ||| |||||
Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794
Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642
||||||||| | | || | ||||||||||||| ||| || || |||||||| ||
Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854
Query 54643 GTAAATAATAACTGAGTTGAGTTTATC 54669
||| || || | |||| ||||| ||
Sbjct 64855 GTATATTATGGCAGAGTCCAGTTTCTC 64881
Score = 111 bits (122), Expect = 2e-19
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146
|||| || || || | |||||| ||||| |||||||| ||| || ||||| |||||
Sbjct 62529 TTCTGCATATCTTCGTCCCATAAATTTCTAGCGGTTAAATCTCGCAGTAGATGTGGATTG 62588
Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206
|| | |||||||||||||||||| | || || ||||| || ||||| |||||
Sbjct 62589 ACAATGACAAATTCTCCAGACAATACGCGCCTCACATAGATATTGCTTGTATATGGTTCA 62648
Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266
| || || ||||| || ||||| || || || || || || ||||||||||| | ||
Sbjct 62649 ATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 62708
Query 53267 AAACTATTTCTAAGACCGT 53285
| |||||| | |||||
Sbjct 62709 AGGGAATTTCTTATACCGT 62727
>seq9873
Length=3435365
Score = 109 bits (120), Expect = 7e-19
Identities = 80/93 (86%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692
|||||||| ||||||||||| || || | |||||||||||||| |||||||||||| ||
Sbjct 2561929 ACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTCAGGA 2561870
Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGA 24725
|||||||| ||||| || ||||| | |||||||
Sbjct 2561869 TATTGAATAGGAAACATTACAAAACGATTTGGA 2561837
>seq9983
Length=1335725
Score = 82.4 bits (90), Expect = 9e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827
|||| || | || ||||| || ||||||||||| |||| || |||||||| |||| |
Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121
Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887
| || ||||| |||||||| | | ||| || || |||| |||| || | ||||
Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181
Query 54888 ATTCTACCGTTGTTACTCCA 54907
|||| | ||||| ||||||
Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593607464443920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |