Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq10371 123 3e-23 seq9873 109 7e-19 seq9983 82.4 9e-11 >seq10371 Length=124667 Score = 123 bits (136), Expect = 3e-23 Identities = 189/267 (71%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 || ||||| || || | |||| | |||||||||| || || ||||| || ||||| Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 54464 CATTTTTCAGA-AAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAAT 54522 || ||| || || || ||| || || || || || ||| || || | |||||| Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734 Query 54523 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 54582 || || || || | ||| ||||| |||||||| ||||| || ||||| ||| ||||| Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794 Query 54583 CAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 54642 ||||||||| | | || | ||||||||||||| ||| || || |||||||| || Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854 Query 54643 GTAAATAATAACTGAGTTGAGTTTATC 54669 ||| || || | |||| ||||| || Sbjct 64855 GTATATTATGGCAGAGTCCAGTTTCTC 64881 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 53087 TTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTA 53146 |||| || || || | |||||| ||||| |||||||| ||| || ||||| ||||| Sbjct 62529 TTCTGCATATCTTCGTCCCATAAATTTCTAGCGGTTAAATCTCGCAGTAGATGTGGATTG 62588 Query 53147 ACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCC 53206 || | |||||||||||||||||| | || || ||||| || ||||| ||||| Sbjct 62589 ACAATGACAAATTCTCCAGACAATACGCGCCTCACATAGATATTGCTTGTATATGGTTCA 62648 Query 53207 ACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAAT 53266 | || || ||||| || ||||| || || || || || || ||||||||||| | || Sbjct 62649 ATGGATTCGTTATTCCCTAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAA 62708 Query 53267 AAACTATTTCTAAGACCGT 53285 | |||||| | ||||| Sbjct 62709 AGGGAATTTCTTATACCGT 62727 >seq9873 Length=3435365 Score = 109 bits (120), Expect = 7e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 |||||||| ||||||||||| || || | |||||||||||||| |||||||||||| || Sbjct 2561929 ACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTCAGGA 2561870 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGGA 24725 |||||||| ||||| || ||||| | ||||||| Sbjct 2561869 TATTGAATAGGAAACATTACAAAACGATTTGGA 2561837 >seq9983 Length=1335725 Score = 82.4 bits (90), Expect = 9e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | || ||||| || ||||||||||| |||| || |||||||| |||| | Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | || ||||| |||||||| | | ||| || || |||| |||| || | |||| Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181 Query 54888 ATTCTACCGTTGTTACTCCA 54907 |||| | ||||| |||||| Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593607464443920