Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_001623.1
Length=133894
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 100 2e-16
seq15293 96.9 3e-15
seq9895 93.3 4e-14
>seq9764
Length=1320143
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
||||||||| ||| | ||||| | || || |||||||| ||| |||| ||| | |
Sbjct 201014 AATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 201073
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
||| || | | | | ||| |||||| || ||||| || | || ||||||
Sbjct 201074 AGACACCATTGAAAACGTAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGATCA 201133
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|||| | | ||||| || ||||| ||||||||||| || |||| | | ||||||||
Sbjct 201134 ACAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACAA 201193
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| || || ||||| || || ||| | || |||||| | || |||||
Sbjct 201194 CATCCAAAAAGAATCCACACTCCACTTAGTTTTACGACTTCGTGGAGG 201241
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || ||| | ||||| | || || |||||||| ||| |||| ||| || |
Sbjct 200786 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200845
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | | ||| || || || |||||||| | || |||||
Sbjct 200846 TGACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200905
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|||| | | ||||| || ||||| || ||||||| | || | | || |||||
Sbjct 200906 ACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAA 200965
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||||||| ||||||||||||||| |||| ||||| | ||||||||
Sbjct 200966 TATTCAGAAAGAATCTACTCTTCACTTGGTTTTACGTCTTCGAGGAGG 201013
Score = 82.4 bits (90), Expect = 7e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020
|||||| || ||| | ||||| | || || |||||||| ||| |||| ||| || |
Sbjct 200102 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200161
Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080
|| || | | | | ||| || || || |||||||| | || |||||
Sbjct 200162 TGACACAATAGAAAACGTAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200221
Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140
|||| | | ||||| || ||||| || ||||||| | || | | || |||||
Sbjct 200222 ACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCAGACTACAA 200281
Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
||||||||| ||||||||||||||| |||| | || | ||||||||
Sbjct 200282 TATTCAGAAAGAATCTACTCTTCACTTGGTTCTGCGTCTTCGAGGAGG 200329
>seq15293
Length=768699
Score = 96.9 bits (106), Expect = 3e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105
|||||| ||||||||||| | || |||||||||||||| || || |||||||||
Sbjct 125844 AAAATTCAAGATAAAGAAGGCATTCCTCCCGATCAACAAAGACTGATTTTCGCGGGCAAA 125785
Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165
|| ||||| ||| ||| || |||| ||||||||||| || |||||||| ||||||
Sbjct 125784 CAGCTGGAGGATGGACGGACTTTGTCCGACTACAATATTCAAAAAGAATCTACACTTCAC 125725
Query 29166 ATGGTGTTACGATTACGAGGAGG 29188
| || | ||| | |||| ||
Sbjct 125724 CTTGTACTTCGACTTAGAGGCGG 125702
>seq9895
Length=179237
Score = 93.3 bits (102), Expect = 4e-14
Identities = 89/114 (78%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134
||| ||||||||| | |||||||| || |||||| |||||||| || ||| || | ||
Sbjct 34978 AGACCAACAAAGATTGATCTTTGCTGGTAAACAATTGGAAGATGGCAGGACTTTGTCAGA 34919
Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188
|| || || ||||||||||||||| | ||| ||||| | || || ||||| ||
Sbjct 34918 CTATAACATCCAGAAGGAATCTACTTTACACTTGGTGCTGCGTTTGCGAGGCGG 34865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428255716314245
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |