Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9764 136 4e-27 seq15293 129 6e-25 seq10177 109 6e-19 >seq9764 Length=1320143 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| ||||| || || || |||||||||||| |||| |||||||| | Sbjct 201014 AATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 201073 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || ||||| | |||| ||||||| ||||||||||| ||||| | || | Sbjct 201074 AGACACCATTGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGATC 201132 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| | |||| ||| ||||| || ||||| |||| | || || || |||| Sbjct 201133 AACAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACA 201192 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| || || |||| || || |||| || || Sbjct 201193 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACG 201229 Score = 123 bits (136), Expect = 3e-23 Identities = 157/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| ||||| || |||||||||||| |||| || |||||| | Sbjct 200330 AATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200389 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| | |||| || || | |||||||| ||||| || | || || Sbjct 200390 TGATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200449 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||||| | |||| ||| ||||| |||||||| |||| | || ||| ||| ||||| Sbjct 200450 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200509 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| || || || |||| || ||||| || |||| Sbjct 200510 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCG 200545 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||||||||| ||||| || |||||||||||| | || || |||||| | Sbjct 199874 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 199933 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | ||||| | || | || || | || ||||| ||||| || | || | Sbjct 199934 TGATACAATAGAAAACG-TGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 199992 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| | |||| ||| ||||| |||||||| |||| | || ||| ||| |||| Sbjct 199993 AACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACA 200052 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || || || |||| || ||||| || |||| Sbjct 200053 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCG 200089 Score = 118 bits (130), Expect = 1e-21 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| || |||||||||||| |||| || |||||| | Sbjct 200102 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200161 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | |||| || || | |||||||| ||||| || | || | Sbjct 200162 TGACACAATAGAAAACG-TAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 200220 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 40865 | ||||| | |||| ||| ||||| ||| |||| |||| || ||| |||| ||||| Sbjct 200221 AACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCA--GACTA 200278 Query 40866 CAACATCCAGAAGGA 40880 ||| || ||||| || Sbjct 200279 CAATATTCAGAAAGA 200293 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||||||||| ||||| || |||||||||||| | || || |||||| | Sbjct 200558 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 200617 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | ||||| | || | || || | || ||||| ||||| || | || | Sbjct 200618 TGATACAATAGAAAACG-TGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 200676 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | ||||| | |||| ||| ||||| |||||||| |||| | || ||| ||| |||| Sbjct 200677 AACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACA 200736 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||| || || || |||| || ||||| || |||| Sbjct 200737 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCG 200773 Score = 118 bits (130), Expect = 1e-21 Identities = 146/195 (75%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| ||||| || |||||||||||| |||| || |||||| | Sbjct 200786 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200845 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | ||||| | |||| || || | |||||||| ||||| || | || | Sbjct 200846 TGACACAATAGAAAACG-TAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 200904 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 40865 | ||||| | |||| ||| ||||| ||| |||| |||| || ||| |||| ||||| Sbjct 200905 AACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCA--GACTA 200962 Query 40866 CAACATCCAGAAGGA 40880 ||| || ||||| || Sbjct 200963 CAATATTCAGAAAGA 200977 Score = 91.5 bits (100), Expect = 2e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||| || || || |||||||||||| | || || ||||| | Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | |||| | || || | || ||||| ||||| || | || || Sbjct 199707 GATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199766 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||||| | |||| ||| || || ||| |||| |||| | || ||| ||| |||||| Sbjct 199767 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAAC 199826 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 || || || || |||| || ||||| || |||| Sbjct 199827 ATTCAAAAAGAATCCACACTTCATCTGGTTCTGCG 199861 >seq15293 Length=768699 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||||||||| |||||||| ||||| | || || || || || Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126325 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| | || | ||||||| |||||||| || ||||| | || || Sbjct 126324 GACACGATTGAAAACG-TGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 126266 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || |||||||| || |||| ||||| || |||||||| Sbjct 126265 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126206 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || ||||| Sbjct 126205 CATCCAGAAGGAATCTACATTGCAT 126181 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||||||||| |||||||| ||||| | || || || || || Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126553 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| | || | ||||||| |||||||| || ||||| | || || Sbjct 126552 GACACGATTGAAAACG-TGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 126494 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || |||||||| || |||| ||||| || |||||||| Sbjct 126493 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126434 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || ||||| Sbjct 126433 CATCCAGAAGGAATCGACATTGCAT 126409 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || ||||||||||| |||||||| ||||| | || || || || || Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126781 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | || ||||| | || | ||||||| |||||||| || ||||| | || || Sbjct 126780 GACACGATTGAAAACG-TGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 126722 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || |||||||| || |||| ||||| || |||||||| Sbjct 126721 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126662 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || ||||| Sbjct 126661 CATCCAGAAGGAATCGACATTGCAT 126637 Score = 109 bits (120), Expect = 6e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || ||||| || ||||| ||||| ||||| | || || || || | Sbjct 127069 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127010 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | ||| |||| | |||||||| ||||| || || ||||| | || || Sbjct 127009 AGATACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCA 126950 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || |||||||| || |||| ||||| || |||||||| Sbjct 126949 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126890 Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||| | || ||||| Sbjct 126889 CATCCAGAAGGAATCGACATTGCAT 126865 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||| ||||| | || |||||||| | Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | || | ||||||| || ||||| ||||| || | || || Sbjct 125868 GACACGATCGAGAACG-TGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 125810 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| |||| || | |||||||||||||||||| || | || || | ||||||||| Sbjct 125809 ACAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAA 125750 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || | || || || || || | || | || ||||| Sbjct 125749 TATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGG 125702 >seq10177 Length=3058365 Score = 109 bits (120), Expect = 6e-19 Identities = 137/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| |||||||| |||||||||||| |||| || || || || Sbjct 2346302 ATGCAGATTTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCTTCC 2346243 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||||| || || | ||||| || || || || | || || Sbjct 2346242 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 2346183 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| ||| |||||||||||||| || | || || || ||| ||||| Sbjct 2346182 CAGCGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGTACTCTGTCCGATTACAAT 2346123 Query 40870 ATCCAGAA 40877 || || || Sbjct 2346122 ATTCAAAA 2346115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515120155549040