Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 136 4e-27
seq15293 129 6e-25
seq10177 109 6e-19
>seq9764
Length=1320143
Score = 136 bits (150), Expect = 4e-27
Identities = 162/217 (75%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| ||||| ||||| || || || |||||||||||| |||| |||||||| |
Sbjct 201014 AATGCAAATTTTCGTGAAAACTCTTACTGGTAAAACCATCACCCTCGAAGTCGAAGCTTC 201073
Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | || ||||| | |||| ||||||| ||||||||||| ||||| | || |
Sbjct 201074 AGACACCATTGAAAACG-TAAAGGCCAAAATTCAGGACAAAGAGGGAATCCCTCCAGATC 201132
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
| ||||| | |||| ||| ||||| || ||||| |||| | || || || ||||
Sbjct 201133 AACAACGTTTAATCTTCGCTGGCAAGCAACTGGAAGACGGCAGAACTCTTTCTGATTACA 201192
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||| || || |||| || || |||| || ||
Sbjct 201193 ACATCCAAAAAGAATCCACACTCCACTTAGTTTTACG 201229
Score = 123 bits (136), Expect = 3e-23
Identities = 157/216 (73%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| || || ||||| ||||| || |||||||||||| |||| || |||||| |
Sbjct 200330 AATGCAAATCTTTGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200389
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | ||| | |||| || || | |||||||| ||||| || | || ||
Sbjct 200390 TGATACAATAGAAAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATCA 200449
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||||| | |||| ||| ||||| |||||||| |||| | || ||| ||| |||||
Sbjct 200450 ACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACAA 200509
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||| || || || |||| || ||||| || ||||
Sbjct 200510 CATTCAAAAAGAATCCACACTTCATCTGGTTCTGCG 200545
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||||||||| ||||| || |||||||||||| | || || |||||| |
Sbjct 199874 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 199933
Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|| | | | ||||| | || | || || | || ||||| ||||| || | || |
Sbjct 199934 TGATACAATAGAAAACG-TGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 199992
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
| ||||| | |||| ||| ||||| |||||||| |||| | || ||| ||| ||||
Sbjct 199993 AACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACA 200052
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||| || || || |||| || ||||| || ||||
Sbjct 200053 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCG 200089
Score = 118 bits (130), Expect = 1e-21
Identities = 146/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| ||||| ||||| || |||||||||||| |||| || |||||| |
Sbjct 200102 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200161
Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | ||||| | |||| || || | |||||||| ||||| || | || |
Sbjct 200162 TGACACAATAGAAAACG-TAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 200220
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 40865
| ||||| | |||| ||| ||||| ||| |||| |||| || ||| |||| |||||
Sbjct 200221 AACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCA--GACTA 200278
Query 40866 CAACATCCAGAAGGA 40880
||| || ||||| ||
Sbjct 200279 CAATATTCAGAAAGA 200293
Score = 118 bits (130), Expect = 1e-21
Identities = 158/217 (73%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||||||||| ||||| || |||||||||||| | || || |||||| |
Sbjct 200558 AATGCAGATCTTCGTAAAAACTCTCACTGGGAAAACCATCACCCTTGAAGTTGAAGCCTC 200617
Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|| | | | ||||| | || | || || | || ||||| ||||| || | || |
Sbjct 200618 TGATACAATAGAAAACG-TGAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATC 200676
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
| ||||| | |||| ||| ||||| |||||||| |||| | || ||| ||| ||||
Sbjct 200677 AACAACGTTTGATCTTCGCTGGCAAGCAGCTGGAAGACGGTAGAACACTCTCCGATTACA 200736
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||| || || || |||| || ||||| || ||||
Sbjct 200737 ACATTCAAAAAGAATCCACACTTCATCTGGTTCTGCG 200773
Score = 118 bits (130), Expect = 1e-21
Identities = 146/195 (75%), Gaps = 6/195 (3%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| ||||| ||||| || |||||||||||| |||| || |||||| |
Sbjct 200786 AATGCAGATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTCGAAGTTGAAGCCTC 200845
Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | ||||| | |||| || || | |||||||| ||||| || | || |
Sbjct 200846 TGACACAATAGAAAACG-TAAAGGCCAAGATCCAAGACAAAGAAGGCATTCCTCCTGATC 200904
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACG--AGCGCACCCTCAACGACTA 40865
| ||||| | |||| ||| ||||| ||| |||| |||| || ||| |||| |||||
Sbjct 200905 AACAACGTTTGATCTTCGCTGGCAAGCAGTTGGAAGACGGTAGGACACTCTCA--GACTA 200962
Query 40866 CAACATCCAGAAGGA 40880
||| || ||||| ||
Sbjct 200963 CAATATTCAGAAAGA 200977
Score = 91.5 bits (100), Expect = 2e-13
Identities = 149/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || ||||| || || || |||||||||||| | || || ||||| |
Sbjct 199647 ATGCAAATCTTTGTGAAAACTCTTACTGGGAAAACCATCACCTTAGAGGTGGAAGCTTCT 199706
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | |||| | || || | || ||||| ||||| || | || ||
Sbjct 199707 GATACTATAGAGAATGTCAAAGCCAAGATCCAAGATAAAGAAGGCATTCCTCCTGATCAA 199766
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
||||| | |||| ||| || || ||| |||| |||| | || ||| ||| ||||||
Sbjct 199767 CAACGTTTGATCTTCGCTGGTAAGCAGTTGGAAGACGGTAGAACACTCTCCGATTACAAC 199826
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|| || || || |||| || ||||| || ||||
Sbjct 199827 ATTCAAAAAGAATCCACACTTCATCTGGTTCTGCG 199861
>seq15293
Length=768699
Score = 129 bits (142), Expect = 6e-25
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || ||||||||||| |||||||| ||||| | || || || || ||
Sbjct 126384 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126325
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || ||||| | || | ||||||| |||||||| || ||||| | || ||
Sbjct 126324 GACACGATTGAAAACG-TGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 126266
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | || | ||| || |||||||| || |||| ||||| || ||||||||
Sbjct 126265 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126206
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
|||||||||||| | || |||||
Sbjct 126205 CATCCAGAAGGAATCTACATTGCAT 126181
Score = 129 bits (142), Expect = 6e-25
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || ||||||||||| |||||||| ||||| | || || || || ||
Sbjct 126612 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126553
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || ||||| | || | ||||||| |||||||| || ||||| | || ||
Sbjct 126552 GACACGATTGAAAACG-TGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 126494
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | || | ||| || |||||||| || |||| ||||| || ||||||||
Sbjct 126493 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126434
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
|||||||||||| | || |||||
Sbjct 126433 CATCCAGAAGGAATCGACATTGCAT 126409
Score = 129 bits (142), Expect = 6e-25
Identities = 153/205 (75%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || ||||||||||| |||||||| ||||| | || || || || ||
Sbjct 126840 ATGCAAATTTTTGTCAAAACGCTCACCGGCAAAACAATCACTCTGGAAGTTGAGGCATCC 126781
Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | || ||||| | || | ||||||| |||||||| || ||||| | || ||
Sbjct 126780 GACACGATTGAAAACG-TGAAAGCTAAAATTCAAGACAAAGAAGGAATCCCTCCAGATCA 126722
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | || | ||| || |||||||| || |||| ||||| || ||||||||
Sbjct 126721 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126662
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
|||||||||||| | || |||||
Sbjct 126661 CATCCAGAAGGAATCGACATTGCAT 126637
Score = 109 bits (120), Expect = 6e-19
Identities = 147/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
||||||||| || || ||||| || ||||| ||||| ||||| | || || || || |
Sbjct 127069 AATGCAAATCTTTGTCAAAACCCTGACGGGAAAAACTATCACGTTGGAAGTTGAGGCATC 127010
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | ||| |||| | |||||||| ||||| || || ||||| | || ||
Sbjct 127009 AGATACGATCGAAAATGTCAAAGCAAAAATTCAAGACAAGGAAGGAATCCCTCCAGATCA 126950
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | || | ||| || |||||||| || |||| ||||| || ||||||||
Sbjct 126949 GCAGAGATTAATTTTCGCCGGAAAACAGCTTGAAGACGGCCGCACACTTTCTGACTACAA 126890
Query 40869 CATCCAGAAGGAGGCCACGCTGCAT 40893
|||||||||||| | || |||||
Sbjct 126889 CATCCAGAAGGAATCGACATTGCAT 126865
Score = 98.7 bits (108), Expect = 1e-15
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || ||||| ||||| | || |||||||| |
Sbjct 125928 ATGCAGATTTTCGTCAAGACTCTCACTGGTAAAACTATCACATTGGAGGTCGAAGCGTCT 125869
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | |||| | || | ||||||| || ||||| ||||| || | || ||
Sbjct 125868 GACACGATCGAGAACG-TGAAAGCGAAAATTCAAGATAAAGAAGGCATTCCTCCCGATCA 125810
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| |||| || | |||||||||||||||||| || | || || | |||||||||
Sbjct 125809 ACAAAGACTGATTTTCGCGGGCAAACAGCTGGAGGATGGACGGACTTTGTCCGACTACAA 125750
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| || || || | || || || || || | || | || |||||
Sbjct 125749 TATTCAAAAAGAATCTACACTTCACCTTGTACTTCGACTTAGAGGCGG 125702
>seq10177
Length=3058365
Score = 109 bits (120), Expect = 6e-19
Identities = 137/188 (73%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| ||||| |||||||| |||||||||||| |||| || || || ||
Sbjct 2346302 ATGCAGATTTTCGTGAAAACCCTCACGGGTAAAACCATCACCCTCGAGGTAGAGGCTTCC 2346243
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | |||||| || || | ||||| || || || || | || ||
Sbjct 2346242 GATACCATCGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCACCAGATCAA 2346183
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| |||||||||| ||| |||||||||||||| || | || || || ||| |||||
Sbjct 2346182 CAGCGACTCATCTTCGCTGGCAAACAGCTGGAGGATGGACGTACTCTGTCCGATTACAAT 2346123
Query 40870 ATCCAGAA 40877
|| || ||
Sbjct 2346122 ATTCAAAA 2346115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515120155549040
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