Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq15293 132 4e-26 seq10177 125 6e-24 seq9764 122 8e-23 >seq15293 Length=768699 Score = 132 bits (146), Expect = 4e-26 Identities = 169/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | |||||| ||||| || | ||||| || || |||||||| ||||| Sbjct 125928 TACCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAG 125987 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| || || ||||||||||| || |||| | | ||||||||| |||| Sbjct 125988 AAAGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAG 126047 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || ||||| |||||| ||| || | ||| | ||||||| |||| ||| Sbjct 126048 GGATTCCTTCTTTGTCCTGAATTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCT-TCG 126106 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||||||||| || ||||| |||||||| ||||| Sbjct 126107 ACTTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||| | |||||| ||||||||||| ||||| ||| || ||| || |||||| ||||| Sbjct 125725 GTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTG 125784 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||| || ||| | || || | || ||||||||||| ||||| || || ||| |||||| Sbjct 125785 TTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCTTTATCTTGAATTTT 125844 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 ||| || | |||| ||||| | ||| |||||||| | || | ||||| || | Sbjct 125845 CGCTTTCACGTTCTCGATCGTGTCAGACGCT-TCGACCTCCAATGTGATAGTTTTACCAG 125903 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||||||||||| Sbjct 125904 TGAGAGTCTTGACGAAAATCTGCAT 125928 Score = 114 bits (126), Expect = 1e-20 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | |||||| || || || |||||||| || Sbjct 126156 TACCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAG 126215 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| || || ||||||||||| ||| | || | | ||||||||| |||| Sbjct 126216 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126275 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| |||||| ||| || | ||| | ||||| | ||| ||| Sbjct 126276 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGC-CTCA 126334 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||||||||| || ||||| |||||||| ||||| Sbjct 126335 ACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | ||| || || || || |||||||| || Sbjct 126384 TACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAG 126443 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| || || ||||||||||| ||| | || | | ||||||||| |||| Sbjct 126444 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126503 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| |||||| ||| || | ||| | ||||| | ||| ||| Sbjct 126504 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGC-CTCA 126562 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||||||||| || ||||| |||||||| ||||| Sbjct 126563 ACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | ||| || || || || |||||||| || Sbjct 126612 TACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAG 126671 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| || || ||||||||||| ||| | || | | ||||||||| |||| Sbjct 126672 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126731 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || || |||||| |||||| ||| || | ||| | ||||| | ||| ||| Sbjct 126732 GGATTCCTTCTTTGTCTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGC-CTCA 126790 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||||||||| || ||||| |||||||| ||||| Sbjct 126791 ACTTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || ||||| | | ||||| || | ||| || || || || |||||||| || Sbjct 126840 TACCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAG 126899 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| || || ||||||||||| ||| | || | | ||||||||| |||| Sbjct 126900 AAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAG 126959 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||||||| ||||||| ||| || | ||||| || || | ||| ||| Sbjct 126960 GGATTCCTTCCTTGTCTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGC-CTCA 127018 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | ||||| || ||||| ||||| ||||| || ||||| Sbjct 127019 ACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCAT 127068 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || |||||||||||||| ||||| | ||| || || || Sbjct 127088 ACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGGCCGTCTTCA 127147 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| ||| |||| | |||||||||||| || || ||||| |||||||| | Sbjct 127148 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTGTCCTGA 127207 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | ||||| || || | ||| ||| || || | || | ||||| Sbjct 127208 ATTTTGGCTTTGACGTTTTCGATCGTATCTGATGC-CTCAACTTCCAACGTGATAGTTTT 127266 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| ||||| ||||| || ||||| Sbjct 127267 TCCCGTCAGGGTTTTGACAAAGATTTGCAT 127296 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || || |||||||||||||| ||||| | ||| || || || Sbjct 127316 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCA 127375 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| ||| |||| | |||||||||||| || || ||||| ||||| ||| Sbjct 127376 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTGG 127435 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| ||| || | || | ||| || | |||||| || | || | || || Sbjct 127436 ATCTTTGCTTTTACGTTCTCAATGGTATCAGAAGCCTCGACTTCCAGAGTTATGGTCTTC 127495 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||||| || || || ||||||||||||| Sbjct 127496 CCGGTCAACGTCTTCACGAAAATCTGCATGG 127526 >seq10177 Length=3058365 Score = 125 bits (138), Expect = 6e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 |||||||||| ||||||||| || ||| || |||||| |||||||| |||||| ||| Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 |||| ||||| ||||| || || || || |||||||| || || || || | | Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||| || | ||| ||||||| ||| | ||||| || || || ||||| || | Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292 Query 118729 AAATCTGCATGG 118740 |||||||||||| Sbjct 2346293 AAATCTGCATGG 2346304 >seq9764 Length=1320143 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | || || || ||||||| ||| || |||||||| ||||||||||| Sbjct 201242 ACCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGA 201183 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | || || || || || |||||| |||| | ||| || ||||| ||||| Sbjct 201182 AAGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGG 201123 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGA 118689 || ||||| ||||| |||||| || || | ||| | |||||| | ||| |||| Sbjct 201122 GATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCT-TCGA 201064 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| ||| | ||||| || || |||||||| || ||||| ||||| Sbjct 201063 CTTCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCAT 201015 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| || | ||| || ||||||||||||||||||||| Sbjct 200101 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG-- 200044 Query 118572 ATAGTGCGCGTA---TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | |||| | || || || ||||| || |||||| |||| | ||| || ||||| ||| Sbjct 200043 AGAGTGTTC-TACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGA 199985 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || ||||| || || ||| || || ||| || | ||| | || || | | || Sbjct 199984 GGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCA 199925 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||| || || ||||||||||| || |||||||| Sbjct 199924 ACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| || | ||| || ||||||||||||||||||||| Sbjct 200557 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCG--G 200500 Query 118572 ATAGTGCGCGTA---TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | |||| | || || || ||||| || |||||| |||| | ||| || ||||| ||| Sbjct 200499 AGAGTGTTC-TACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGA 200441 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || ||||| || |||||| || || || || | ||| | || || | | || Sbjct 200440 GGAATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCA 200381 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||| | ||||| || || |||||||| ||||| || ||||| Sbjct 200380 ACTTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331 Score = 100 bits (110), Expect = 2e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| || | ||| || ||||||||||||||||||||| Sbjct 200785 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG-- 200728 Query 118572 ATAGTGCGCGTA---TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | |||| | || || || ||||| || |||||| |||| | ||| || ||||| ||| Sbjct 200727 AGAGTGTTC-TACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGA 200669 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCG 118688 || ||||| || || ||| || || ||| || | ||| | || || | | || Sbjct 200668 GGAATGCCTTCTTTATCTTGGATCTTGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCA 200609 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | ||| | ||||| || || ||||||||||| || |||||||| Sbjct 200608 ACTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| || | ||| || ||||||||||||||||||||| Sbjct 199873 CCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCG--G 199816 Query 118572 ATAGTGCGCGTA---TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGA 118628 | |||| | || || || | ||| || |||||| |||| | ||| || ||||| ||| Sbjct 199815 AGAGTGTTC-TACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGA 199757 Query 118629 GGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTC 118687 || ||||| || || ||| || || ||| || | || | || || | ||| || Sbjct 199756 GGAATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCT-TC 199698 Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||| | ||| | ||||| || || |||||||| ||||| || |||||| Sbjct 199697 CACCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCATG 199646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433749086490268