Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15293 111 2e-19 seq15076 105 8e-18 seq10785 104 3e-17 seq10177 100 3e-16 seq15163 98.7 1e-15 seq13083 98.7 1e-15 seq10556 98.7 1e-15 seq9764 96.9 4e-15 seq10440 95.1 1e-14 seq8672 89.7 6e-13 seq6398 89.7 6e-13 >seq15293 Length=768699 Score = 111 bits (122), Expect = 2e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || | || ||| | |||||||| || || || |||||||| || ||||||| Sbjct 127069 TCCACCACGTAGACGAAGAACCAAATGTAAGGTCGATTCTTTTTGAATGTTATAATCAGA 127128 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || |||| || || ||||| || ||||| || | |||||||| || | || Sbjct 127129 GAGAGTACGGCCGTCTTCAAGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGG 127188 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || ||||||||| ||| |||| | ||||| | | | ||| || | || | Sbjct 127189 GATGCCTTCCTTGTCC-TGAATTTTGGCTTTGACGTTTTCGATCGTATCTGATGCCTCAA 127247 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || | |||||| ||||| ||||| || || || ||||||||||||||| Sbjct 127248 CTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127297 Score = 109 bits (120), Expect = 6e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | |||||| | |||||||||||||| ||||| || || ||||| |||| Sbjct 126842 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126901 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || ||||| || || ||||| || | || |||||| || | || Sbjct 126902 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126961 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| |||||| ||||| | | | ||| || | || || Sbjct 126962 ATTCCTTCCTTGT-CTTGAATTTTTGCTTTGACATTTTCGATCGTATCTGATGCCTCAAC 127020 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||| ||||| ||||| || || || ||||||||||||||| Sbjct 127021 TTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGACAAAGATTTGCATT 127069 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | |||||| | |||||||||||||| ||||| || || ||||| |||| Sbjct 126158 CCACCACGTAAACGGAGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAA 126217 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || ||||| || || ||||| || | || |||||| || | || Sbjct 126218 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126277 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||| | ||| | | | | ||||||| | || || Sbjct 126278 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126336 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| |||||||| || ||||| || ||||| |||||||| Sbjct 126337 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | |||||| | |||||||||||||| ||||| || || ||||| |||| Sbjct 126386 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126445 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || ||||| || || ||||| || | || |||||| || | || Sbjct 126446 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126505 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||| | ||| | | | | ||||||| | || || Sbjct 126506 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126564 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| |||||||| || ||||| || ||||| |||||||| Sbjct 126565 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | |||||| | |||||||||||||| ||||| || || ||||| |||| Sbjct 126614 CCACCACGTAAACGGAGAACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAA 126673 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || ||||| || || ||||| || | || |||||| || | || Sbjct 126674 AGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGG 126733 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | || |||| | ||| |||| | ||| | | | | ||||||| | || || Sbjct 126734 ATTCCTTCTTTGT-CTTGAATTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAAC 126792 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||| |||||||| || ||||| || ||||| |||||||| Sbjct 126793 TTCCAGAGTGATTGTTTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || |||||||||||||| || | || |||||| | || || ||||| || || ||||| Sbjct 125738 TCTTTTTGAATATTGTAGTCGGACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAA 125797 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || |||| || || |||| || | || || ||| | ||| |||| | ||| | | Sbjct 125798 ATCAGTCTTTGTTGATCGGGAGGAATGC-CTTCTTTATCTTGAATTTTCGCTTTCACGTT 125856 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || ||| || || | ||||| ||||| || || || ||||| || Sbjct 125857 CTCGATCGTGTCAGACGCTTCGACCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGAC 125916 Query 43172 AAAGATTTGCAT 43183 || || ||||| Sbjct 125917 GAAAATCTGCAT 125928 >seq15076 Length=3015225 Score = 105 bits (116), Expect = 8e-18 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 1907766 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 1907825 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 1907826 TGACCACTATACTACCGAGGA 1907846 >seq10785 Length=889782 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 55429 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 55488 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 55489 TACTACCGAGGA 55500 >seq10177 Length=3058365 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 42996 TTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATG 43055 ||||||||||||||||| | |||||| || | || || ||||| || |||||||| ||| Sbjct 2346115 TTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGATG 2346174 Query 43056 AGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCC 43115 |||||||| || || | || | | ||||||||| ||| || |||| || | Sbjct 2346175 AGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCG 2346234 Query 43116 ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAG 43175 | || ||| | || || |||| ||||||||||| ||||| || || || || || Sbjct 2346235 ATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGAAA 2346294 Query 43176 ATTTGCAT 43183 || ||||| Sbjct 2346295 ATCTGCAT 2346302 >seq15163 Length=236609 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 98433 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 98374 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 98373 TATACTATCGAGGA 98360 >seq13083 Length=396399 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| ||||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 26862 ATAAAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 26921 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||| |||||| Sbjct 26922 TACTAACCACTATACTATCGAGGA 26945 >seq10556 Length=418102 Score = 98.7 bits (108), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| ||||| || | ||||||||||||| ||||||||||||||||||||| | Sbjct 105223 ATTAAAAAAAATCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 105164 Query 60114 TACTCACCACTATACTACCGAGGA 60137 |||| |||||||||||| |||||| Sbjct 105163 TACTAACCACTATACTATCGAGGA 105140 >seq9764 Length=1320143 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||||| | ||||| |||| ||| | |||| || |||||||| |||||||| | Sbjct 199874 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 199815 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || | |||| || | ||||||||||||||| || | || || || || | || Sbjct 199814 GAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGG 199755 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || || || ||| || ||||| || | | || || | |||||| Sbjct 199754 AATGCCTTCTTTATCTTGGATCTTGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCAC 199695 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| || || || || || |||||||||||||| Sbjct 199694 CTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647 >seq10440 Length=2225863 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1300576 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1300635 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 1300636 TACTATCGAGGA 1300647 >seq8672 Length=738 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||| Sbjct 2 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAG 61 Query 60136 GA 60137 || Sbjct 62 GA 63 >seq6398 Length=318 Score = 89.7 bits (98), Expect = 6e-13 Identities = 57/62 (92%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 60076 GGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAG 60135 ||||||||||||| ||||||||||||||||||||| ||||| |||||||||||| |||| Sbjct 318 GGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTATACTATCGAG 259 Query 60136 GA 60137 || Sbjct 258 GA 257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571707675214120