Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq15293 113 7e-20 seq9764 102 1e-16 seq9895 100 4e-16 seq10244 84.2 3e-11 >seq15293 Length=768699 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| || |||||||| | |||||||| || || |||||||| ||| Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | || || || | |||||||| ||||| |||||||| |||||||| ||||| Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 126049 Query 146171 ATTCCTTCTTTATCTTG 146187 ||||||||||| || || Sbjct 126050 ATTCCTTCTTTGTCCTG 126066 Score = 98.7 bits (108), Expect = 1e-15 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||||||||| | ||| | || | ||||||||||| ||||| || || | Sbjct 125700 TTCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGG 125759 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | ||| || | ||||| || || ||||||| |||||| ||||| |||| Sbjct 125760 ACAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAG 125819 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||||||||| Sbjct 125820 GAATGCCTTCTTTATCTTG 125838 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || |||||||| || || || || || ||||| || | || || || Sbjct 126176 ACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126235 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||| || ||||| ||||| |||||||| ||||| ||||||||||| ||||| Sbjct 126236 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTG 126294 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || || ||||| || || || || || ||||| || | || || || Sbjct 126404 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126463 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||| || ||||| ||||| |||||||| ||||| ||||||||||| ||||| Sbjct 126464 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTG 126522 Score = 89.7 bits (98), Expect = 8e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||| || || ||||| || || || || || ||||| || | || || || Sbjct 126632 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126691 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||| || ||||| ||||| |||||||| ||||| ||||||||||| ||||| Sbjct 126692 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTG 126750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||||||||| || |||||||| || |||||||| || ||||| | | || || Sbjct 127316 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAATCAGAGAGAGTACGACCGTCTTCA 127375 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||| ||||| || || ||||| | |||||||| || || || ||||| |||||||| Sbjct 127376 AGTTGCTTTCCGGCGAAGATCAAACGCTGCTGATCAGGTGGGATGCCTTCCTTATCTTG 127434 >seq9764 Length=1320143 Score = 102 bits (112), Expect = 1e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | ||| ||||| || | |||||||||||| ||||| || |||| Sbjct 201015 TTCCTCCTCGAAGACGTAAAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTG 200956 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || || | || || || || || ||||| || ||||| | ||| ||||| |||| Sbjct 200955 AGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200896 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| ||||| Sbjct 200895 GAATGCCTTCTTTGTCTTG 200877 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/228 (67%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| ||| || || || | || |||||||| || || ||||| ||| Sbjct 201241 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 201182 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||||| || || | ||| || ||||| || || || | ||| ||||| ||||| Sbjct 201181 AGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGG 201122 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||| ||||| || || || |||||| ||| ||| Sbjct 201121 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACT 201062 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || || ||||| |||||||| || | ||||| | ||| ||||||||| Sbjct 201061 TCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCATT 201014 Score = 93.3 bits (102), Expect = 6e-14 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | | ||||| || | |||||||||||| ||||| || |||| Sbjct 200331 TTCCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTG 200272 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || || || | || || || || || ||||| || ||||| | ||| ||||| |||| Sbjct 200271 AGAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200212 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||| ||||| Sbjct 200211 GAATGCCTTCTTTGTCTTG 200193 Score = 89.7 bits (98), Expect = 8e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | | |||| ||| | || |||||||| || || ||||| | Sbjct 199875 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 199816 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||| | || || || || || ||||| || ||||| | ||| ||||| |||| Sbjct 199815 AGAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAG 199756 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||||||||| Sbjct 199755 GAATGCCTTCTTTATCTTG 199737 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | | |||| ||| | || |||||||| || || ||||| | Sbjct 200103 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200044 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||| | || || | || || ||||| || ||||| | ||| ||||| |||| Sbjct 200043 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 199984 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||||||||| Sbjct 199983 GAATGCCTTCTTTATCTTG 199965 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||| ||| | | |||| ||| | || |||||||| || || ||||| | Sbjct 200787 TTCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGG 200728 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | || ||||| | || || | || || ||||| || ||||| | ||| ||||| |||| Sbjct 200727 AGAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAG 200668 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||| |||||||||||||| Sbjct 200667 GAATGCCTTCTTTATCTTG 200649 >seq9895 Length=179237 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| |||||||||||||| || || ||||| ||||| | ||| |||| ||| || Sbjct 34883 ACCAAGTGTAAAGTAGATTCCTTCTGGATGTTATAGTCTGACAAAGTCCTGCCATCTTCC 34942 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 |||||||| |||||||| ||||||||||| || || || ||||| ||| Sbjct 34943 AATTGTTTACCAGCAAAGATCAATCTTTGTTGGTCTGGTGGAATGCCT 34990 >seq10244 Length=1057850 Score = 84.2 bits (92), Expect = 3e-11 Identities = 131/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 23995 TTTTGAATAAAATCTTTGCCTTT---TACAAGTTTAACATAATCACATTTATCAAACCAT 24051 || || | ||| ||||| ||||| |||||| | |||| ||| ||||||||||| Sbjct 103726 TTGTGTACAAACTCTTTCCCTTTCATTACAAGC---AAATAAAGACACTTATCAAACCAC 103782 Query 24052 CTTGCGTGTTGTATCCAAGGATCATCGTCTGTTTCCCATTTATTTAAACCACCATCACAA 24111 | || |||| |||||||||||||||| || |||||| | |||| || ||| | || Sbjct 103783 TTGGCATGTTCTATCCAAGGATCATCGAATGGTTCCCAATCCATTAATCCTCCACCGCAG 103842 Query 24112 TAAAAGCATTTAACTTTATCACTTTTTCCAGTATAAAAGAATCCAGCTTCTGCTAGTTTT 24171 ||| |||| || ||| | |||| | |||| |||| ||||| ||| |||| | Sbjct 103843 TAATAGCACAATGTTTCATCGCCACTTCCTGAATAATAGAAACCAGCAATTGCCAGTTCT 103902 Query 24172 TCTGTA 24177 ||| || Sbjct 103903 TCTTTA 103908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743383466343680