Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 109 4e-19
seq10177 91.5 1e-13
seq15293 89.7 3e-13
>seq9764
Length=1320143
Score = 109 bits (120), Expect = 4e-19
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | ||| |||| ||| | |||| ||||||||| || |||||||| ||
Sbjct 200330 TCCTCCTCGAAGACGCAGAACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGA 200271
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| | |||| |||||||||||||| ||||| || | || || || || ||
Sbjct 200270 GAGTGTCCTACCGTCTTCCAACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 200211
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || || ||||| ||||| ||||| | |||| | || | | ||| ||
Sbjct 200210 AATGCCTTCTTTGTCTTGGATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAAC 200151
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||||||||| || |||||||||||||| |||||||||||
Sbjct 200150 TTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATCTGCAT 200103
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 34181 ACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCC 34240
|||| ||| | |||| ||||||||| || |||||||| || || | |||| |||
Sbjct 200995 ACCAAGTGAAGAGTAGATTCTTTCTGAATATTGTAGTCTGAGAGTGTCCTACCGTCTTCC 200936
Query 34241 AACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCT 34300
||||||||||| ||||| || | || || || || || | || || |||||
Sbjct 200935 AACTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGGAATGCCTTCTTTGTCTTGG 200876
Query 34301 ATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTG 34360
||||| ||||| | |||| | || | | ||| || || | |||||||||||
Sbjct 200875 ATCTTGGCCTTTACGTTTTCTATTGTGTCAGAGGCTTCAACTTCGAGGGTGATGGTTTTC 200816
Query 34361 CCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| |||||||||||||| |||||||||||
Sbjct 200815 CCAGTGAGAGTTTTCACGAAGATCTGCAT 200787
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | ||| ||||| || | || |||||| || |||||||| |||||
Sbjct 200558 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 200499
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| | |||| |||| ||||||||| ||||| || | || || || || ||
Sbjct 200498 GAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 200439
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341
| || || ||||| ||||| ||| | || |||| | ||| | | ||| ||
Sbjct 200438 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAAC 200379
Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||||||||||| || |||||||||||||||||||| |||||
Sbjct 200378 TTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCAT 200331
Score = 91.5 bits (100), Expect = 1e-13
Identities = 159/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | ||| ||||| || | || |||||| || |||||||| |||||
Sbjct 199874 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 199815
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| | |||| ||||||||||| || ||||| || | || || || || ||
Sbjct 199814 GAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGG 199755
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| || || || || ||||| ||||| | || |||| | ||| | | ||| |
Sbjct 199754 AATGCCTTCTTTATCTTGGATCTTG-GCTTTGACATTCTCTATAGTATCAGAAGCTTCCA 199696
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | ||||||||||| || || ||||||||||||||||| |||||
Sbjct 199695 CCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | ||| ||||| || | || |||||| || |||||||| |||||
Sbjct 200102 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 200043
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| | |||| |||| ||||||||| ||||| || | || || || || ||
Sbjct 200042 GAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 199983
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| || || || || ||||| ||||| | | |||| | ||| | | ||| |
Sbjct 199982 AATGCCTTCTTTATCTTGGATCTTG-GCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 199924
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | ||||||||||| || ||||||||||| || |||||||||||
Sbjct 199923 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 199875
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
||| || || || | ||| ||||| || | || |||||| || |||||||| |||||
Sbjct 200786 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 200727
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| | |||| |||| ||||||||| ||||| || | || || || || ||
Sbjct 200726 GAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 200667
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| || || || || ||||| ||||| | | |||| | ||| | | ||| |
Sbjct 200666 AATGCCTTCTTTATCTTGGATCTTG-GCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 200608
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| || | ||||||||||| || ||||||||||| || |||||||||||
Sbjct 200607 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCAT 200559
>seq10177
Length=3058365
Score = 91.5 bits (100), Expect = 1e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 34200 CTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAA 34259
|||| || || ||||| |||||||| ||| | || |||| ||| ||||| ||||| |
Sbjct 2346113 CTTTTTGAATATTGTAATCGGACAGAGTACGTCCATCCTCCAGCTGTTTGCCAGCGAAGA 2346172
Query 34260 TGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGG 34319
|||| ||||| || || || | | |||||||| ||||| ||| | ||
Sbjct 2346173 TGAGTCGCTGTTGATCTGGTGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCT 2346232
Query 34320 CTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAA 34379
| || | ||||| | || || || | ||||||||||| || ||||| |||||||| |
Sbjct 2346233 CGATGGTATCGGAAGCCTCTACCTCGAGGGTGATGGTTTTACCCGTGAGGGTTTTCACGA 2346292
Query 34380 AGATCTGCAT 34389
| ||||||||
Sbjct 2346293 AAATCTGCAT 2346302
>seq15293
Length=768699
Score = 89.7 bits (98), Expect = 3e-13
Identities = 137/193 (71%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257
||| ||||| ||||||||||| || || ||| |||| || | ||| || || |||||
Sbjct 126877 TTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAA 126936
Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGAT 34316
||| | | |||||| || || | | |||||||| || ||||||||| | ||
Sbjct 126937 AATTAATCTCTGCTGATCTGGAGGGATTCCTTCCTTGTCTTGAAT-TTTTGCTTTGACAT 126995
Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376
| |||| ||| | | || || |||| |||||| ||||| || || || ||||| |
Sbjct 126996 TTTCGATCGTATCTGATGCCTCAACTTCCAACGTGATAGTTTTTCCCGTCAGGGTTTTGA 127055
Query 34377 CAAAGATCTGCAT 34389
||||||| |||||
Sbjct 127056 CAAAGATTTGCAT 127068
Score = 86.0 bits (94), Expect = 4e-12
Identities = 158/229 (69%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221
|||||| | || | || || ||||| | ||| |||||| || || |||||||||||
Sbjct 125701 TCCGCCTCTAAGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGA 125760
Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281
|| || | || |||| ||| ||||| |||||||| || | || || ||| ||
Sbjct 125761 CAAAGTCCGTCCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGG 125820
Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340
| || || || || || ||| ||||| | | | |||| || | || |||||
Sbjct 125821 AATGCCTTCTTTATCTTGAAT-TTTCGCTTTCACGTTCTCGATCGTGTCAGACGCTTCGA 125879
Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
| |||| ||||| ||||| || |||||||| || || || ||||||||
Sbjct 125880 CCTCCAATGTGATAGTTTTACCAGTGAGAGTCTTGACGAAAATCTGCAT 125928
Score = 84.2 bits (92), Expect = 1e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||| || || ||| ||| ||||| ||||||||||| || || ||| ||||
Sbjct 126173 AGAACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCT 126232
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297
|| | ||| || || |||||||| | | |||||| || || | | || |||||
Sbjct 126233 TCAAGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCT 126292
Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356
|| ||| ||||| | | | |||| |||| | || || |||| ||||| ||
Sbjct 126293 TGAAT-TTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGT 126351
Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||||||||||| ||||| ||||| || |||||
Sbjct 126352 TTTGCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323011446110240
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