Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq9873 87.8 2e-12
>seq9873
Length=3435365
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/201 (70%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345
|| || ||||||||||| | |||||||||||| | |||||||||||| ||||| |||
Sbjct 2563110 AAGGTGAGACCTGGCATAATTCCTCGTTTTTTCAGCCAAAATATAGCTGCAAAACTACCG 2563051
Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405
||||| |||||||| || || ||||| || || | || ||| | || | |
Sbjct 2563050 CTGAAGAAAATACCTTCGACAGCCGCAAACGCGACTACACGTTCAGGAAATGTAGCACTC 2562991
Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465
| | | ||||| ||| |||||||| ||||||| | ||||| | ||||
Sbjct 2562990 TCATGATTGATCCAGTTTAATGCCCAATTAGCTTTTTTTCCCACACAAGGAAGTGTCTCA 2562931
Query 16466 ATTGCATTAAATAAATAATTT 16486
| ||||||||||| |||||
Sbjct 2562930 AGCGCATTAAATAAGAAATTT 2562910
Score = 86.0 bits (94), Expect = 6e-12
Identities = 149/214 (70%), Gaps = 6/214 (3%)
Strand=Plus/Minus
Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106
|||| ||| | | || ||||| ||||| |||||||| || || | ||| | |
Sbjct 2563426 ATCCTAATGCAACGAACAATCTGTCCGCGACAAATTCGATGTAATTACACATAAGTGTGC 2563367
Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAA 16166
| ||||| |||||||||| ||||| | ||| | ||||||||| | |||||| || | |
Sbjct 2563366 AATTCATACCTATTAATTCGACAGGTAATGCCTGTGTTAAAAATTCTTTTTCAATTTCCA 2563307
Query 16167 CCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG---TGTT 16223
| || || || || || | || | ||| | || | || ||| || | ||||
Sbjct 2563306 CGGCATCCATTATAAT--CGATTTC-ACATGCTCAAATGATGGCTTTTGTATGATATGTT 2563250
Query 16224 TAAACATTATACAAGCAAAATCACAATGCAATCC 16257
||||||||| ||| || ||||||||||| |||||
Sbjct 2563249 TAAACATTAAACAGGCGAAATCACAATGTAATCC 2563216
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462423087849400
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |