Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq9873 87.8 2e-12 >seq9873 Length=3435365 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 16286 AATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCA 16345 || || ||||||||||| | |||||||||||| | |||||||||||| ||||| ||| Sbjct 2563110 AAGGTGAGACCTGGCATAATTCCTCGTTTTTTCAGCCAAAATATAGCTGCAAAACTACCG 2563051 Query 16346 GAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAttt 16405 ||||| |||||||| || || ||||| || || | || ||| | || | | Sbjct 2563050 CTGAAGAAAATACCTTCGACAGCCGCAAACGCGACTACACGTTCAGGAAATGTAGCACTC 2562991 Query 16406 ttactttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCT 16465 | | | ||||| ||| |||||||| ||||||| | ||||| | |||| Sbjct 2562990 TCATGATTGATCCAGTTTAATGCCCAATTAGCTTTTTTTCCCACACAAGGAAGTGTCTCA 2562931 Query 16466 ATTGCATTAAATAAATAATTT 16486 | ||||||||||| ||||| Sbjct 2562930 AGCGCATTAAATAAGAAATTT 2562910 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 16047 ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC 16106 |||| ||| | | || ||||| ||||| |||||||| || || | ||| | | Sbjct 2563426 ATCCTAATGCAACGAACAATCTGTCCGCGACAAATTCGATGTAATTACACATAAGTGTGC 2563367 Query 16107 AGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAA 16166 | ||||| |||||||||| ||||| | ||| | ||||||||| | |||||| || | | Sbjct 2563366 AATTCATACCTATTAATTCGACAGGTAATGCCTGTGTTAAAAATTCTTTTTCAATTTCCA 2563307 Query 16167 CCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAG---TGTT 16223 | || || || || || | || | ||| | || | || ||| || | |||| Sbjct 2563306 CGGCATCCATTATAAT--CGATTTC-ACATGCTCAAATGATGGCTTTTGTATGATATGTT 2563250 Query 16224 TAAACATTATACAAGCAAAATCACAATGCAATCC 16257 ||||||||| ||| || ||||||||||| ||||| Sbjct 2563249 TAAACATTAAACAGGCGAAATCACAATGTAATCC 2563216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462423087849400