Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq15293 89.7 4e-13
>seq15293
Length=768699
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| | | ||| || ||||| ||||| || |||||||||||||| || ||
Sbjct 125930 CCACCGCGAAGTCTCAAAACCAAATGCAGGGTAGATTCCTTCTGAATGTTATAATCAGAA 125989
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| ||| |||| || || ||||||||||| || ||||| | ||| || || |||||
Sbjct 125990 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCGGCAAAGATCAATCTCTGCTGATCTGGAGGG 126049
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCAC 45288
| || || |||||| || |||| |||| || || | ||||| | || ||
Sbjct 126050 ATTCCTTCTTTGTCCTGAA-TTTTAGCTTTCACGTTTTCAATCGTGTCCGATGCTTCGAC 126108
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|||| || || || ||||| || || || || ||||| ||||||||
Sbjct 126109 TTCCAGAGTGATTGTTTTGCCGGTGAGTGTTTTGACAAAAATTTGCAT 126156
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| |||| || |||||||| ||||||||||| ||| ||| |||| ||
Sbjct 126176 ACCAAATGCAATGTAGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126235
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| |||||||||||||| || || | ||| || || ||||| | || || ||||| |
Sbjct 126236 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126295
Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
| |||| |||| || || | |||| |||| || |||| || || || ||
Sbjct 126296 A-TTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTT 126354
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| || || || || ||||| ||||||||
Sbjct 126355 GCCGGTGAGCGTTTTGACAAAAATTTGCAT 126384
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| |||| || |||||||| ||||||||||| ||| ||| |||| ||
Sbjct 126404 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126463
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| |||||||||||||| || || | ||| || || ||||| | || || ||||| |
Sbjct 126464 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126523
Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
| |||| |||| || || | |||| |||| || |||| || || || ||
Sbjct 126524 A-TTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTT 126582
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| || || || || ||||| ||||||||
Sbjct 126583 GCCGGTGAGCGTTTTGACAAAAATTTGCAT 126612
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| |||| || |||||||| ||||||||||| ||| ||| |||| ||
Sbjct 126632 ACCAAATGCAATGTCGATTCCTTCTGGATGTTGTAGTCAGAAAGTGTGCGGCCGTCTTCA 126691
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| |||||||||||||| || || | ||| || || ||||| | || || ||||| |
Sbjct 126692 AGCTGTTTTCCGGCGAAAATTAATCTCTGCTGATCTGGAGGGATTCCTTCTTTGTCTTGA 126751
Query 45248 ATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
| |||| |||| || || | |||| |||| || |||| || || || ||
Sbjct 126752 A-TTTTAGCTTTCACGTTTTCAATCGTGTCGGATGCCTCAACTTCCAGAGTGATTGTTTT 126810
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| || || || || ||||| ||||||||
Sbjct 126811 GCCGGTGAGCGTTTTGACAAAAATTTGCAT 126840
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395001150437959
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |