Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq9873 111 2e-19 >seq9873 Length=3435365 Score = 111 bits (122), Expect = 2e-19 Identities = 161/225 (72%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 || ||| ||||| | | ||||| || || ||||| || || |||||| ||||| || Sbjct 2562352 TTACTTTTCTTTTGGATCAGAAATATACGTTTCAATGAGCAAAGAATACATCTCAGAATG 2562293 Query 14512 TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTC 14571 |||||||| || || || ||||| ||||||||||| | ||||| | || |||||| Sbjct 2562292 GATGTTTTCTATTGCAATTTGAAAGCCATAAAAACAACGTGCTTCGGTAATTTTTACCTC 2562233 Query 14572 T-GAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14630 | || | || ||| || || ||| |||||||| |||||||| || ||||| |||| Sbjct 2562232 TTGACTGAA-TCTCTCAATCAGATTCTCATTAACAATACCATCGGATGCGGCAAAGAATG 2562174 Query 14631 CCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTTT 14675 | || | | ||||||||||| ||| ||| || || |||| Sbjct 2562173 CTAAGACATGAGAAATAAAGTATTTCTCGTCAGAACTTAGCTTTT 2562129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482252875087720