Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq9764 111 1e-19
seq15293 105 5e-18
>seq9764
Length=1320143
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || | || |||| |||||||| |||||||||||||||||||| ||||
Sbjct 200102 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 200043
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| |||| ||| ||||||| || ||||| || |||| | | ||||||||| ||
Sbjct 200042 GAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 199983
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| |||||| ||||| || | | || || || | | | | || ||| || ||
Sbjct 199982 AATGCCTTCTTTATCTTGGATCT-TGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 199924
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||||| ||||||| |||| || || | |||||||| || || ||||||
Sbjct 199923 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 199874
Score = 111 bits (122), Expect = 1e-19
Identities = 164/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || | || |||| |||||||| |||||||||||||||||||| ||||
Sbjct 200786 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 200727
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| |||| ||| ||||||| || ||||| || |||| | | ||||||||| ||
Sbjct 200726 GAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 200667
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| |||||| ||||| || | | || || || | | | | || ||| || ||
Sbjct 200666 AATGCCTTCTTTATCTTGGATCT-TGGCTTTCACGTTTTCTATTGTATCAGAGGCTTCAA 200608
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||||| ||||||| |||| || || | |||||||| || || ||||||
Sbjct 200607 CTTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTTACGAAGATCTGCATT 200558
Score = 107 bits (118), Expect = 1e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || | || |||| |||||||| |||||||||||||||||||| ||||
Sbjct 200558 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 200499
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| |||| ||| ||||||| || ||||| || |||| | | ||||||||| ||
Sbjct 200498 GAGTGTTCTACCGTCTTCCAGCTGCTTGCCAGCGAAGATCAAACGTTGTTGATCAGGAGG 200439
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277
| |||||| || || || | ||| || | | | | || ||| || ||
Sbjct 200438 AATGCCTTCTTTGTCTTGGATCTTGGCCTTCACATTTTCTATTGTATCAGAGGCTTCAAC 200379
Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
||| | ||||||| |||| || || | ||||| ||||| |||||||||
Sbjct 200378 TTCGAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACAAAGATTTGCATT 200330
Score = 104 bits (114), Expect = 2e-17
Identities = 162/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157
|||||| || || | || |||| |||||||| |||||||||||||||||||| ||||
Sbjct 199874 TCCTCCTCGAAGACGCAGAACCAGATGAAGTGTGGATTCTTTTTGAATGTTGTAATCGGA 199815
Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217
| |||| ||| |||||||| || || || || |||| | | ||||||||| ||
Sbjct 199814 GAGTGTTCTACCGTCTTCCAACTGCTTACCAGCGAAGATCAAACGTTGTTGATCAGGAGG 199755
Query 18218 CACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276
| |||||| ||||| || | | || ||||| | | | ||| ||| | ||
Sbjct 199754 AATGCCTTCTTTATCTTGGATCT-TGGCTTTGACATTCTCTATAGTATCAGAAGCTTCCA 199696
Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| |||| || || | ||||| ||||| ||||||||
Sbjct 199695 CCTCTAAGGTGATGGTTTTCCCAGTAAGAGTTTTCACAAAGATTTGCAT 199647
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
||||| || |||| | || | ||| ||||| ||||||||||| |||||||| || |
Sbjct 201241 CCTCCACGAAGTCGTAAAACTAAGTGGAGTGTGGATTCTTTTTGGATGTTGTAATCAGAA 201182
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | | ||||||| ||| ||||| || |||| | | ||||||||| ||
Sbjct 201181 AGAGTTCTGCCGTCTTCCAGTTGCTTGCCAGCGAAGATTAAACGTTGTTGATCTGGAGGG 201122
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| || || || || ||||| ||| || | | ||| ||||| | ||| |
Sbjct 201121 ATTCCCTCTTTGTCCTGAATTTTGGCCTTTACGTTTTCAATGGTGTCTGAAGCTTCGACT 201062
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| | ||||||| |||| || || | ||||| || ||||||||||||
Sbjct 201061 TCGAGGGTGATGGTTTTACCAGTAAGAGTTTTCACGAAAATTTGCATT 201014
>seq15293
Length=768699
Score = 105 bits (116), Expect = 5e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167
|||| |||||| | ||||||||| |||||||||||||| |||||||||| || ||
Sbjct 125711 AGTCGAAGTACAAGGTGAAGTGTAGATTCTTTTTGAATATTGTAGTCGGACAAAGTCCGT 125770
Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227
| ||| |||| ||||||||||| | || |||||||||||||| || | ||||||
Sbjct 125771 CCATCCTCCAGCTGTTTGCCCGCGAAAATCAGTCTTTGTTGATCGGGAGGAATGCCTTCT 125830
Query 18228 TTATCGGCAATTT 18240
||||| |||||
Sbjct 125831 TTATCTTGAATTT 125843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379272898961355
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |