Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq10371 109 7e-19 seq9873 100 4e-16 seq9983 91.5 2e-13 >seq10371 Length=124667 Score = 109 bits (120), Expect = 7e-19 Identities = 175/249 (70%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701 || ||||| || || | |||| | |||||||||| || || ||||| || ||||| Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 63702 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760 || ||| || || || ||| || || || || || ||| || || | |||||| Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734 Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820 || || || || | ||| ||||| |||||||| ||||| || || || ||| ||||| Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794 Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880 || |||||| | | || | ||||||||||||| ||| || || |||||||| || Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854 Query 63881 GTAAATAAT 63889 ||| || || Sbjct 64855 GTATATTAT 64863 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 62295 TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62354 |||| ||||||| || | | | ||| |||| || || || | |||||| ||||| Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558 Query 62355 TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTC 62414 |||||||| ||| || ||||| || || || | ||||||||||||||||| | | Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618 Query 62415 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62474 | || ||||| || ||||| ||||| | || || ||||| || ||||| || || Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678 Query 62475 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGT 62523 || || || || ||||||||||| | || | |||||| | ||||| Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGT 62727 Score = 91.5 bits (100), Expect = 2e-13 Identities = 218/326 (67%), Gaps = 8/326 (2%) Strand=Plus/Plus Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847 |||| |||||||| ||||| |||||| ||| | |||| ||||||||| | |||| Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197 Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907 || || | ||||| ||||| | || | ||| | || || ||||| || Sbjct 63198 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAGTTTATCAA 63257 Query 62908 AATCAAA-----TCGCCCATCTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTAC 62961 |||| || ||| | ||||| |||||||||| | || | |||||| | ||||| Sbjct 63258 AATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTAC 63317 Query 62962 ACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 63021 |||| || || || || | | | |||| | || || ||||| | || || || | Sbjct 63318 ACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCATT 63377 Query 63022 TGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAATG 63080 ||||||| |||| || || ||||| | |||| | || || ||| |||||||| || Sbjct 63378 TGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCATA 63436 Query 63081 AATGGAGTACCAGTTTCAATCTGAGA 63106 | || || || ||||| | ||||| Sbjct 63437 TAAGGTGTTCCGGTTTCTACTTGAGA 63462 >seq9873 Length=3435365 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 |||||||| ||||||||||| || || | |||||||||||||| |||||||||||| || Sbjct 2561929 ACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTCAGGA 2561870 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGA 34172 ||||| || || || || ||||| | ||||||| Sbjct 2561869 TATTGAATAGGAAACATTACAAAACGATTTGGA 2561837 >seq9983 Length=1335725 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 |||| || | || ||||| |||||||||||||| ||||| || ||||| || |||| | Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | || ||||| |||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181 Query 64126 ATTCTACCGTTGTTACTCCA 64145 |||| | ||||| |||||| Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629696525439120