Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq10371 109 7e-19
seq9873 100 4e-16
seq9983 91.5 2e-13
>seq10371
Length=124667
Score = 109 bits (120), Expect = 7e-19
Identities = 175/249 (70%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 63642 CTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 63701
|| ||||| || || | |||| | |||||||||| || || ||||| || |||||
Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675
Query 63702 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 63760
|| ||| || || || ||| || || || || || ||| || || | ||||||
Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734
Query 63761 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTT 63820
|| || || || | ||| ||||| |||||||| ||||| || || || ||| |||||
Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794
Query 63821 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 63880
|| |||||| | | || | ||||||||||||| ||| || || |||||||| ||
Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854
Query 63881 GTAAATAAT 63889
||| || ||
Sbjct 64855 GTATATTAT 64863
Score = 107 bits (118), Expect = 2e-18
Identities = 161/229 (70%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 62295 TGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 62354
|||| ||||||| || | | | ||| |||| || || || | |||||| |||||
Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558
Query 62355 TCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTC 62414
|||||||| ||| || ||||| || || || | ||||||||||||||||| | |
Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618
Query 62415 CGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCA 62474
| || ||||| || ||||| ||||| | || || ||||| || ||||| || ||
Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678
Query 62475 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGT 62523
|| || || || ||||||||||| | || | |||||| | |||||
Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGT 62727
Score = 91.5 bits (100), Expect = 2e-13
Identities = 218/326 (67%), Gaps = 8/326 (2%)
Strand=Plus/Plus
Query 62788 TACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAA 62847
|||| |||||||| ||||| |||||| ||| | |||| ||||||||| | ||||
Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197
Query 62848 TATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAA 62907
|| || | ||||| ||||| | || | ||| | || || ||||| ||
Sbjct 63198 CGTCGATGACTTTATCTAGATTACGAGTAACGATTTTCGCGACTGTTTTAAGTTTATCAA 63257
Query 62908 AATCAAA-----TCGCCCATCTATTA-CAAACATGTTCAATGCAACAGATGCCAGATTAC 62961
|||| || ||| | ||||| |||||||||| | || | |||||| | |||||
Sbjct 63258 AATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTAC 63317
Query 62962 ACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACT 63021
|||| || || || || | | | |||| | || || ||||| | || || || |
Sbjct 63318 ACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCATT 63377
Query 63022 TGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAATG 63080
||||||| |||| || || ||||| | |||| | || || ||| |||||||| ||
Sbjct 63378 TGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCATA 63436
Query 63081 AATGGAGTACCAGTTTCAATCTGAGA 63106
| || || || ||||| | |||||
Sbjct 63437 TAAGGTGTTCCGGTTTCTACTTGAGA 63462
>seq9873
Length=3435365
Score = 100 bits (110), Expect = 4e-16
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139
|||||||| ||||||||||| || || | |||||||||||||| |||||||||||| ||
Sbjct 2561929 ACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTCAGGA 2561870
Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGGA 34172
||||| || || || || ||||| | |||||||
Sbjct 2561869 TATTGAATAGGAAACATTACAAAACGATTTGGA 2561837
>seq9983
Length=1335725
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065
|||| || | || ||||| |||||||||||||| ||||| || ||||| || |||| |
Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121
Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125
| || ||||| |||||||| | | ||| || || |||| ||||||| | ||||
Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181
Query 64126 ATTCTACCGTTGTTACTCCA 64145
|||| | ||||| ||||||
Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629696525439120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |