Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq10371 158 1e-33 seq9873 104 2e-17 >seq10371 Length=124667 Score = 158 bits (174), Expect = 1e-33 Identities = 194/263 (74%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 37092 CCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCC 37151 ||| | ||||||| ||| |||| || ||| |||||||| |||| ||| ||||| Sbjct 62546 CCATAAATTTCTAGCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCC 62605 Query 37152 AGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACT 37211 ||| ||||| | || ||| |||||||| ||||||||||||||||| || ||||| | Sbjct 62606 AGACAATACGCGCCTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCC 62665 Query 37212 TAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCC 37271 ||| || || | || || || || ||||| |||||||||| |||| |||||| | || Sbjct 62666 TAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACC 62725 Query 37272 ATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTT 37329 ||| || || ||| | |||| ||||||||||||||||||||| || | || Sbjct 62726 GTGTTCCGCGATCTTCGCTTTCAATTCACACCAATCCCATAAATCTGTTGGCTTAACGTT 62785 Query 37330 AACCACATATCATATTGTAGAAT 37352 ||||||||||||||| || || Sbjct 62786 --CCACATATCATATTGGAGGAT 62806 Score = 104 bits (114), Expect = 2e-17 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471 ||| | ||| ||||||| || || || |||||| | || || ||| ||||||||||| Sbjct 64636 AGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATT 64695 Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531 |||||||||||| || | || || ||| || |||||||| | || ||| ||||| | Sbjct 64696 ATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAATACCAACAGCTACTCTCATCAA 64755 Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591 |||||| || || ||||| | ||| ||| || ||| || | || | | || | Sbjct 64756 CATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTTCAGCAAGTAACTTCTCTCAAG 64815 Query 38592 TGTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTAT 38634 ||||| | |||| |||| |||| ||| | |||| ||||||| Sbjct 64816 CGTTTTAAAACCAATATAATTATAATTGA--AGTCTCGATCGTAT 64858 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 37927 ATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGA 37986 ||||| |||| ||||| |||| ||||| ||||| ||| | ||| |||| ||||| Sbjct 63632 ATATACAATTCTTTAAATTCATCGCCCCAAACATCAGCTAAGCGAGGAGATTCATATGGA 63691 Query 37987 CACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCAT 38046 ||||||| ||| || || || | || ||||||||||| | ||| |||| |||| Sbjct 63692 CACATTAAGCTCCACATCTCGTCATTATACACACGTTCCATAAAAAGATCTGGTATCCAT 63751 Query 38047 AATGCAGTAAATAAATCTTTGGTTC 38071 | ||| |||||||||| ||| || Sbjct 63752 AGAGCATAAAATAAATCTCTGGCTC 63776 >seq9873 Length=3435365 Score = 104 bits (114), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491 || |||||| | ||||| | || ||||| || ||||| ||||| || || | | || Sbjct 2563436 ACCTTTTCAAATCCTAATGCAACGAACAATCTGTCCGCGACAAATTCGATGTAATTACAC 2563377 Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551 || | |||||||||||||| | || || || | || ||| ||||| || ||| Sbjct 2563376 ATAAGTGTGCAATTCATACCTATTAATTCGACAGGTAATGCCTGTGTTAAAAATTCTTTT 2563317 Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGG---ATGT 11608 || || | || ||||| || || ||||| | | || | || | ||| ||| ||| Sbjct 2563316 TCAATTTCCACGGCATCCATTATAATCGA---TTTCACATGCTCAAATGATGGCTTTTGT 2563260 Query 11609 AATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652 | | |||||||||||||||||| || |||||||||||||| || Sbjct 2563259 ATGATATGTTTAAACATTAAACAGGCGAAATCACAATGTAATCC 2563216 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/210 (70%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958 ||| || || || | ||| |||||| || ||||| || ||||| || || |||||||| Sbjct 2562328 ATACGTTTCAATGAGCAAAGAATACATCTCAGAATGGATGTTTTCTATTGCAATTTGAAA 2562269 Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018 ||||| ||||| ||||| || | | | ||| || | ||||| || | ||| Sbjct 2562268 GCCATAAAAACAACGTGCTTCGGTAATTTTTACCTCTTGACTGAATCTCTCAATCAGATT 2562209 Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||| ||||||||||| | ||||| ||||||| | ||| ||||||||||| Sbjct 2562208 CTCATTAACAATACCATCGGATGCGGCAAAGAATGCTAAGACATGAGAAATAAAGTATTT 2562149 Query 12079 TTCGTCTTTAGTTA---ATTTATCCCAATC 12105 ||||| | ||| || ||||||||| Sbjct 2562148 CTCGTCAGAACTTAGCTTTTCATCCCAATC 2562119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468434731963760