Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq10371 158 1e-33
seq9873 104 2e-17
>seq10371
Length=124667
Score = 158 bits (174), Expect = 1e-33
Identities = 194/263 (74%), Gaps = 4/263 (2%)
Strand=Plus/Plus
Query 37092 CCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCC 37151
||| | ||||||| ||| |||| || ||| |||||||| |||| ||| |||||
Sbjct 62546 CCATAAATTTCTAGCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCC 62605
Query 37152 AGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACT 37211
||| ||||| | || ||| |||||||| ||||||||||||||||| || ||||| |
Sbjct 62606 AGACAATACGCGCCTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCC 62665
Query 37212 TAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTCAATCC 37271
||| || || | || || || || ||||| |||||||||| |||| |||||| | ||
Sbjct 62666 TAAAATCTGTGCCGTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACC 62725
Query 37272 ATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTT--CTTT 37329
||| || || ||| | |||| ||||||||||||||||||||| || | ||
Sbjct 62726 GTGTTCCGCGATCTTCGCTTTCAATTCACACCAATCCCATAAATCTGTTGGCTTAACGTT 62785
Query 37330 AACCACATATCATATTGTAGAAT 37352
||||||||||||||| || ||
Sbjct 62786 --CCACATATCATATTGGAGGAT 62806
Score = 104 bits (114), Expect = 2e-17
Identities = 159/225 (71%), Gaps = 4/225 (2%)
Strand=Plus/Plus
Query 38412 AGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATT 38471
||| | ||| ||||||| || || || |||||| | || || ||| |||||||||||
Sbjct 64636 AGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAATATCGTTCGGACAAATAATT 64695
Query 38472 ATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAG 38531
|||||||||||| || | || || ||| || |||||||| | || ||| ||||| |
Sbjct 64696 ATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAATACCAACAGCTACTCTCATCAA 64755
Query 38532 CATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAA 38591
|||||| || || ||||| | ||| ||| || ||| || | || | | || |
Sbjct 64756 CATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTTCAGCAAGTAACTTCTCTCAAG 64815
Query 38592 TGTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTAT 38634
||||| | |||| |||| |||| ||| | |||| |||||||
Sbjct 64816 CGTTTTAAAACCAATATAATTATAATTGA--AGTCTCGATCGTAT 64858
Score = 82.4 bits (90), Expect = 7e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 37927 ATATATAATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGA 37986
||||| |||| ||||| |||| ||||| ||||| ||| | ||| |||| |||||
Sbjct 63632 ATATACAATTCTTTAAATTCATCGCCCCAAACATCAGCTAAGCGAGGAGATTCATATGGA 63691
Query 37987 CACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCAT 38046
||||||| ||| || || || | || ||||||||||| | ||| |||| ||||
Sbjct 63692 CACATTAAGCTCCACATCTCGTCATTATACACACGTTCCATAAAAAGATCTGGTATCCAT 63751
Query 38047 AATGCAGTAAATAAATCTTTGGTTC 38071
| ||| |||||||||| ||| ||
Sbjct 63752 AGAGCATAAAATAAATCTCTGGCTC 63776
>seq9873
Length=3435365
Score = 104 bits (114), Expect = 2e-17
Identities = 158/224 (71%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 11432 ACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGAC 11491
|| |||||| | ||||| | || ||||| || ||||| ||||| || || | | ||
Sbjct 2563436 ACCTTTTCAAATCCTAATGCAACGAACAATCTGTCCGCGACAAATTCGATGTAATTACAC 2563377
Query 11492 ATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTT 11551
|| | |||||||||||||| | || || || | || ||| ||||| || |||
Sbjct 2563376 ATAAGTGTGCAATTCATACCTATTAATTCGACAGGTAATGCCTGTGTTAAAAATTCTTTT 2563317
Query 11552 TCTATATTAACCGCATCAATGATTATCGACGTTATAACTTCCTTAGATGGTGG---ATGT 11608
|| || | || ||||| || || ||||| | | || | || | ||| ||| |||
Sbjct 2563316 TCAATTTCCACGGCATCCATTATAATCGA---TTTCACATGCTCAAATGATGGCTTTTGT 2563260
Query 11609 AATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACC 11652
| | |||||||||||||||||| || |||||||||||||| ||
Sbjct 2563259 ATGATATGTTTAAACATTAAACAGGCGAAATCACAATGTAATCC 2563216
Score = 93.3 bits (102), Expect = 4e-14
Identities = 147/210 (70%), Gaps = 3/210 (1%)
Strand=Plus/Minus
Query 11899 ATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAA 11958
||| || || || | ||| |||||| || ||||| || ||||| || || ||||||||
Sbjct 2562328 ATACGTTTCAATGAGCAAAGAATACATCTCAGAATGGATGTTTTCTATTGCAATTTGAAA 2562269
Query 11959 TCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATT 12018
||||| ||||| ||||| || | | | ||| || | ||||| || | |||
Sbjct 2562268 GCCATAAAAACAACGTGCTTCGGTAATTTTTACCTCTTGACTGAATCTCTCAATCAGATT 2562209
Query 12019 CTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078
|||||| ||||||||||| | ||||| ||||||| | ||| |||||||||||
Sbjct 2562208 CTCATTAACAATACCATCGGATGCGGCAAAGAATGCTAAGACATGAGAAATAAAGTATTT 2562149
Query 12079 TTCGTCTTTAGTTA---ATTTATCCCAATC 12105
||||| | ||| || |||||||||
Sbjct 2562148 CTCGTCAGAACTTAGCTTTTCATCCCAATC 2562119
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468434731963760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |