Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq10371 120 4e-22 seq9873 105 9e-18 seq9983 86.0 8e-12 >seq10371 Length=124667 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 65088 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTC 65147 |||| ||||||| || ||| | ||| |||| || || || | |||||| ||||| Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558 Query 65148 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 65207 |||||||| ||| || ||||| ||||| || | |||||||||||||||||| | | Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618 Query 65208 CGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCA 65267 | || ||||| || ||||| ||||| | || || ||||| || ||||| || || Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678 Query 65268 GTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGT 65316 || || || || ||||||||||| | || | |||||| | ||||| Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGT 62727 Score = 118 bits (130), Expect = 1e-21 Identities = 188/267 (70%), Gaps = 2/267 (1%) Strand=Plus/Plus Query 66435 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 66494 || ||||| || || | |||| | |||||||||| || || ||||| || ||||| Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 66495 CATTTTTCAGA-AAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 || ||| || || || ||| || || || || || ||| || || | |||||| Sbjct 64676 TATCGTTCGGACAAATA-ATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAAT 64734 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 || || || || | ||| ||||| |||||||| ||||| || ||||| ||| ||||| Sbjct 64735 ACCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTT 64794 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673 || |||||| | | || | ||||||||||||| ||| || || |||||||| || Sbjct 64795 CAGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATC 64854 Query 66674 GTAAATAATAACCGAGTTGAGTTTATC 66700 ||| || || | |||| ||||| || Sbjct 64855 GTATATTATGGCAGAGTCCAGTTTCTC 64881 Score = 96.9 bits (106), Expect = 5e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 65971 TATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGAC 66030 |||||||| || || || || |||||||||| | || | |||| |||||| |||| Sbjct 63633 TATACAATTCTTTAAATTCATCGCCCCAAACATCAGCTAAGCGAGGAGATTCATATGGAC 63692 Query 66031 ACATCAACGACCAC-TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAA 66089 |||| || |||| |||| ||||| | ||| |||| |||||| ||||| || ||||| Sbjct 63693 ACATTAAGCTCCACATCTC-GTCATTATACACACGTTCCATAAAAAGATCTGGTATCCAT 63751 Query 66090 AGAGCTATAAATAAATCTCTGGTTC 66114 ||||| |||||||||||||| || Sbjct 63752 AGAGCATAAAATAAATCTCTGGCTC 63776 >seq9873 Length=3435365 Score = 105 bits (116), Expect = 9e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 36656 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 36715 |||||||| ||||||||||| || || | |||||||||||||| |||||||||||| || Sbjct 2561929 ACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTCAGGA 2561870 Query 36716 TATTGAATTGGAAAAATAACAAATCTATTTTGA 36748 |||||||| ||||| || ||||| | |||| || Sbjct 2561869 TATTGAATAGGAAACATTACAAAACGATTTGGA 2561837 >seq9983 Length=1335725 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | || ||||| || ||||||||||| |||| || |||||||| |||| | Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | || ||||| |||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181 Query 66919 ATTCTACCGTTGTTACTCCA 66938 |||| | ||||| |||||| Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658046274506360