Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25] 15,379 sequences; 300,316,566 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10371 156 6e-33 seq9873 104 3e-17 seq9983 95.1 2e-14 >seq10371 Length=124667 Score = 156 bits (172), Expect = 6e-33 Identities = 222/311 (71%), Gaps = 6/311 (2%) Strand=Plus/Plus Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026 |||| ||||||| || ||| | ||| |||| || ||||| | |||||| ||||| Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558 Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086 |||||||| ||| || ||||| ||||| || | |||||||||||||||||| | | Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618 Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146 | || ||||| || ||||||||||| | ||||| ||||| || ||||| || || Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678 Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATT 79206 || || ||||||||||||||||| | || | |||||| | ||||| | ||| Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGTGTTCCGCGATC 62738 Query 79207 TTATCTTTTAGAGATTC---CCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCA 79263 || |||| | |||| ||||||||| | ||| | || ||| ||||| | |||| Sbjct 62739 TTCGCTTTCA---ATTCACACCAATCCCATAAATCTGTTGGCTTAACGTTCCACATATCA 62795 Query 79264 TATTGTAGAAT 79274 ||||| || || Sbjct 62796 TATTGGAGGAT 62806 Score = 114 bits (126), Expect = 2e-20 Identities = 185/266 (70%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373 || ||||| || || | |||| | |||||||||| || || ||||| || ||||| Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675 Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433 || ||| |||| ||| || || || || || || || || | |||||| Sbjct 64676 TATCGTTCGGACAAATAATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAATA 64735 Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493 || || || || | ||| ||||| |||||||| ||||| || ||||| || |||||| Sbjct 64736 CCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTTC 64795 Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553 | ||||||| | | || | ||||||||||||| ||| || || |||||||| ||| Sbjct 64796 AGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATCG 64855 Query 80554 TAAATAATAACCGAGTTGAGTTTATC 80579 || || || | |||| ||||| || Sbjct 64856 TATATTATGGCAGAGTCCAGTTTCTC 64881 Score = 95.1 bits (104), Expect = 2e-14 Identities = 221/327 (68%), Gaps = 10/327 (3%) Strand=Plus/Plus Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519 |||| |||||||| ||||| |||||| ||| | |||| ||||||||| | |||| Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197 Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATT-ACTTTGACCACATCCTTTAGTTTGAGA 79578 || || | ||||| ||||| | || || | ||| | || || ||||| | Sbjct 63198 CGTCGATGACTTTATCTAGATTAC-GAGTAACGATTTTCGCGACTGTTTTAAGTTTATCA 63256 Query 79579 AAATCAAA-----TCGTCCATCTATTA-CAAACATGTTCAACGCGACAGATGCCAGATTA 79632 ||||| || |||| | ||||| |||||||||| | |||| |||||| | |||| Sbjct 63257 AAATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTA 63316 Query 79633 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACAC 79692 || || || || || || | | | |||| | ||||| ||||| | ||| || || Sbjct 63317 CACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCAT 63376 Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAAT 79751 || || || |||| || || ||||| | |||| | || || ||| |||||||| || Sbjct 63377 TTGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCAT 63435 Query 79752 GAACGGAGTACCAGTTTCAATCTGAGA 79778 | || || || ||||| | ||||| Sbjct 63436 ATAAGGTGTTCCGGTTTCTACTTGAGA 63462 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCG--GCTAATTCACAACTCGCCTCTAATGCTCCGT 79357 || ||||| |||| |||| ||| || || ||||||||||| || ||||| || || | Sbjct 62903 TACGTTTCGTAAGTGCCTT--TTTCCGCAGCCAATTCACAACTGGCTTCTAAGGCACCAT 62960 Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417 |||||| ||||||||||| || | || || |||| || ||| ||| || || |||| Sbjct 62961 AATAAAGCGTTTCGAAAATTTTAATGTTAAGTTCTTTCGCCTCTTTGCTCTCGAAGGGAT 63020 Query 79418 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463 | | || | ||||| |||||||| ||||| | |||||||| Sbjct 63021 ATCGCATTAGTAGGAACGCATCTGCTAAACCTTGTATTCCAATACC 63066 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909 |||| ||| || || || || ||||||||||| |||| | |||| |||| | |||| Sbjct 63633 TATACAATTCTTTAAATTCATCGCCCCAAACATCAGCTAAGCGAGGAGATTCATATGGAC 63692 Query 79910 ACATCAACGACCAC-TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968 |||| || |||| ||| | |||| | || |||| |||||| ||||| || ||||| Sbjct 63693 ACATTAAGCTCCACATCT-CGTCATTATACACACGTTCCATAAAAAGATCTGGTATCCAT 63751 Query 79969 AGAGCTATAAATAGATCTCTGGTTC 79993 ||||| ||||| |||||||| || Sbjct 63752 AGAGCATAAAATAAATCTCTGGCTC 63776 >seq9873 Length=3435365 Score = 104 bits (114), Expect = 3e-17 Identities = 81/97 (84%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 50454 ATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513 || ||||||||| ||||||||||| || || | |||||||||||||| ||||||||||| Sbjct 2561933 ATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTC 2561874 Query 50514 ATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 | ||||||| || || || || ||||| | ||||||| Sbjct 2561873 AGGATATTGAATAGGAAACATTACAAAACGATTTGGA 2561837 >seq9983 Length=1335725 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 |||| || | || ||||| |||||||||||||| |||| || ||||| || ||||| | Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | || |||||||||||||| | | ||| || || |||| ||||||| | |||| Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181 Query 80798 ATTCTACCGTTGTTACTCCA 80817 |||| | ||||| |||||| Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718130721801560