Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cyphomyrmex_20costatus_20[refseq_20GCF_5F001594065.1_202016-03-25]
15,379 sequences; 300,316,566 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq10371 156 6e-33
seq9873 104 3e-17
seq9983 95.1 2e-14
>seq10371
Length=124667
Score = 156 bits (172), Expect = 6e-33
Identities = 222/311 (71%), Gaps = 6/311 (2%)
Strand=Plus/Plus
Query 78967 TGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTC 79026
|||| ||||||| || ||| | ||| |||| || ||||| | |||||| |||||
Sbjct 62499 TGAACGGATCCAAAATTTGCGAGTATCTCGTTCTGCATATCTTCGTCCCATAAATTTCTA 62558
Query 79027 TCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTC 79086
|||||||| ||| || ||||| ||||| || | |||||||||||||||||| | |
Sbjct 62559 GCGGTTAAATCTCGCAGTAGATGTGGATTGACAATGACAAATTCTCCAGACAATACGCGC 62618
Query 79087 CGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCA 79146
| || ||||| || ||||||||||| | ||||| ||||| || ||||| || ||
Sbjct 62619 CTCACATAGATATTGCTTGTATATGGTTCAATGGATTCGTTATTCCCTAAAATCTGTGCC 62678
Query 79147 GTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGATT 79206
|| || ||||||||||||||||| | || | |||||| | ||||| | |||
Sbjct 62679 GTCGAGGCCGTTGGCATAGGTGCTATTAAAAGGGAATTTCTTATACCGTGTTCCGCGATC 62738
Query 79207 TTATCTTTTAGAGATTC---CCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCA 79263
|| |||| | |||| ||||||||| | ||| | || ||| ||||| | ||||
Sbjct 62739 TTCGCTTTCA---ATTCACACCAATCCCATAAATCTGTTGGCTTAACGTTCCACATATCA 62795
Query 79264 TATTGTAGAAT 79274
||||| || ||
Sbjct 62796 TATTGGAGGAT 62806
Score = 114 bits (126), Expect = 2e-20
Identities = 185/266 (70%), Gaps = 0/266 (0%)
Strand=Plus/Plus
Query 80314 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 80373
|| ||||| || || | |||| | |||||||||| || || ||||| || |||||
Sbjct 64616 CTGGACATCTGCTGGTTATTAGTACAGGCATTAAATAGCGTTGGTGAAGCATGTGTAAAA 64675
Query 80374 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATT 80433
|| ||| |||| ||| || || || || || || || || | ||||||
Sbjct 64676 TATCGTTCGGACAAATAATTATATGTTTCTATGACTTTGTCAATGTCATTTCCATGAATA 64735
Query 80434 CCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTC 80493
|| || || || | ||| ||||| |||||||| ||||| || ||||| || ||||||
Sbjct 64736 CCAACAGCTACTCTCATCAACATATGCTGAGGCCTTTCGACTATCTTAGAGTTGATTTTC 64795
Query 80494 AACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 80553
| ||||||| | | || | ||||||||||||| ||| || || |||||||| |||
Sbjct 64796 AGCAAGTAACTTCTCTCAAGCGTTTTAAAACCAATATAATTATAATTGAAGTCTCGATCG 64855
Query 80554 TAAATAATAACCGAGTTGAGTTTATC 80579
|| || || | |||| ||||| ||
Sbjct 64856 TATATTATGGCAGAGTCCAGTTTCTC 64881
Score = 95.1 bits (104), Expect = 2e-14
Identities = 221/327 (68%), Gaps = 10/327 (3%)
Strand=Plus/Plus
Query 79460 TACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAA 79519
|||| |||||||| ||||| |||||| ||| | |||| ||||||||| | ||||
Sbjct 63138 TACCAATAGGTCTGTGTCTACGATTAGATGTTTTCGTTTCTTCGATAGGATAAAAGTTAA 63197
Query 79520 TATCTATAATTTTATTGAGATTCCTGACTATT-ACTTTGACCACATCCTTTAGTTTGAGA 79578
|| || | ||||| ||||| | || || | ||| | || || ||||| |
Sbjct 63198 CGTCGATGACTTTATCTAGATTAC-GAGTAACGATTTTCGCGACTGTTTTAAGTTTATCA 63256
Query 79579 AAATCAAA-----TCGTCCATCTATTA-CAAACATGTTCAACGCGACAGATGCCAGATTA 79632
||||| || |||| | ||||| |||||||||| | |||| |||||| | ||||
Sbjct 63257 AAATCGAAAGTTTTCGTGTCTGTATTAACAAACATGTTGACAGCGATAGATGCTAAATTA 63316
Query 79633 CAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACAC 79692
|| || || || || || | | | |||| | ||||| ||||| | ||| || ||
Sbjct 63317 CACACAGCGACTTCTCCAGGACCGGAGTATTCAACAATTTCGGTGCACAAGTTGCTGCAT 63376
Query 79693 TTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG-TTACACGCATCCTTATAAAGAAT 79751
|| || || |||| || || ||||| | |||| | || || ||| |||||||| ||
Sbjct 63377 TTGATAGTGCCTATATGCTGATGATT-CGATTTTCGATTGCAATGATCTTTATAAAGCAT 63435
Query 79752 GAACGGAGTACCAGTTTCAATCTGAGA 79778
| || || || ||||| | |||||
Sbjct 63436 ATAAGGTGTTCCGGTTTCTACTTGAGA 63462
Score = 91.5 bits (100), Expect = 2e-13
Identities = 121/166 (73%), Gaps = 4/166 (2%)
Strand=Plus/Plus
Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCG--GCTAATTCACAACTCGCCTCTAATGCTCCGT 79357
|| ||||| |||| |||| ||| || || ||||||||||| || ||||| || || |
Sbjct 62903 TACGTTTCGTAAGTGCCTT--TTTCCGCAGCCAATTCACAACTGGCTTCTAAGGCACCAT 62960
Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGAT 79417
|||||| ||||||||||| || | || || |||| || ||| ||| || || ||||
Sbjct 62961 AATAAAGCGTTTCGAAAATTTTAATGTTAAGTTCTTTCGCCTCTTTGCTCTCGAAGGGAT 63020
Query 79418 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 79463
| | || | ||||| |||||||| ||||| | ||||||||
Sbjct 63021 ATCGCATTAGTAGGAACGCATCTGCTAAACCTTGTATTCCAATACC 63066
Score = 84.2 bits (92), Expect = 3e-11
Identities = 107/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 79850 TATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGAC 79909
|||| ||| || || || || ||||||||||| |||| | |||| |||| | ||||
Sbjct 63633 TATACAATTCTTTAAATTCATCGCCCCAAACATCAGCTAAGCGAGGAGATTCATATGGAC 63692
Query 79910 ACATCAACGACCAC-TCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAA 79968
|||| || |||| ||| | |||| | || |||| |||||| ||||| || |||||
Sbjct 63693 ACATTAAGCTCCACATCT-CGTCATTATACACACGTTCCATAAAAAGATCTGGTATCCAT 63751
Query 79969 AGAGCTATAAATAGATCTCTGGTTC 79993
||||| ||||| |||||||| ||
Sbjct 63752 AGAGCATAAAATAAATCTCTGGCTC 63776
>seq9873
Length=3435365
Score = 104 bits (114), Expect = 3e-17
Identities = 81/97 (84%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 50454 ATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTC 50513
|| ||||||||| ||||||||||| || || | |||||||||||||| |||||||||||
Sbjct 2561933 ATTTACTTCTTCTACTGTCCAAAAAGAGGCTACAGCCTTTTTATACATGTTCCAGATGTC 2561874
Query 50514 ATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550
| ||||||| || || || || ||||| | |||||||
Sbjct 2561873 AGGATATTGAATAGGAAACATTACAAAACGATTTGGA 2561837
>seq9983
Length=1335725
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737
|||| || | || ||||| |||||||||||||| |||| || ||||| || ||||| |
Sbjct 1104062 CACTGAACACCTTCTTTGTCTCCTTGTGTAGATTGGATATAGCAATTCTAGCTGCTAAGA 1104121
Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797
| || |||||||||||||| | | ||| || || |||| ||||||| | ||||
Sbjct 1104122 TTGCGTAATCTGGATGTTGATTGATCATAGTCGCCGCAGTTTCAGCTGCCAAGTTATCCA 1104181
Query 80798 ATTCTACCGTTGTTACTCCA 80817
|||| | ||||| ||||||
Sbjct 1104182 ATTCAATTGTTGTCACTCCA 1104201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718130721801560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |